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  5. Cpa|evm.model.tig00020553.159

Cpa|evm.model.tig00020553.159


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL27a component


Gene families : OG0005909 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005909_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020553.159
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00026710 evm_27.TU.AmTr_v1... Cellular respiration.oxidative phosphorylation.NADH... 0.15 OrthoFinder output from all 47 species
Aob_g00717 No alias component *(NQO9/TYKY) of NADH dehydrogenase electron... 0.01 OrthoFinder output from all 47 species
Cba_g33302 No alias component *(NQO9/TYKY) of NADH dehydrogenase electron... 0.03 OrthoFinder output from all 47 species
Dde_g01939 No alias component *(NQO9/TYKY) of NADH dehydrogenase electron... 0.02 OrthoFinder output from all 47 species
Ehy_g10424 No alias component *(NQO9/TYKY) of NADH dehydrogenase electron... 0.02 OrthoFinder output from all 47 species
Len_g14946 No alias component *(NQO9/TYKY) of NADH dehydrogenase electron... 0.01 OrthoFinder output from all 47 species
Solyc10g051350.2.1 Solyc10g051350 component NQO9/TYKY of NADH dehydrogenase electron... 0.01 OrthoFinder output from all 47 species
Tin_g22625 No alias component *(NQO9/TYKY) of NADH dehydrogenase electron... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR021131 Ribosomal_L18e/L15P 258 370
IPR017896 4Fe4S_Fe-S-bd 117 171
No external refs found!