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  5. Cpa|evm.model.tig00020553.146

Cpa|evm.model.tig00020553.146


Description : Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana


Gene families : OG0001089 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001089_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020553.146
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Adi_g058897 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059705 No alias splicing factor *(SR45a) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g07726 No alias splicing factor *(SR45a) & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g05560 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g009676 No alias splicing factor *(SR45a) & original description: CDS=1-786 0.03 OrthoFinder output from all 47 species
Azfi_s0265.g060940 No alias splicing factor *(SR45a) & original description: CDS=1-867 0.02 OrthoFinder output from all 47 species
Azfi_s0608.g079154 No alias not classified & original description: CDS=135-584 0.02 OrthoFinder output from all 47 species
Cba_g24697 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G085700.1 Ceric.05G085700 splicing factor *(SR45a) & original description:... 0.01 OrthoFinder output from all 47 species
Dac_g07607 No alias splicing factor *(SR45a) & original description: none 0.01 OrthoFinder output from all 47 species
Len_g03706 No alias splicing factor *(SR45a) & original description: none 0.01 OrthoFinder output from all 47 species
Len_g43173 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Mp8g15180.1 No alias Serine/arginine-rich splicing factor SR45a... 0.02 OrthoFinder output from all 47 species
Pir_g02735 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005358 No alias splicing factor *(SR45a) & original description: CDS=1-864 0.01 OrthoFinder output from all 47 species
Solyc02g061840.3.1 Solyc02g061840 Serine/arginine-rich splicing factor SR45a... 0.01 OrthoFinder output from all 47 species
Solyc03g033310.4.1 Solyc03g033310 Serine/arginine-rich splicing factor SR45a... 0.02 OrthoFinder output from all 47 species
Zm00001e013302_P002 Zm00001e013302 Serine/arginine-rich splicing factor SR45a... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP HCCA
MF GO:0000340 RNA 7-methylguanosine cap binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0015098 molybdate ion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
BP GO:0015689 molybdate ion transport IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 31 100
No external refs found!