Cpa|evm.model.tig00020539.8 (EMB2780)

Aliases : EMB2780

Description : DNA polymerase delta catalytic subunit OS=Oryza sativa subsp. japonica

Gene families : OG0002006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002006_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020539.8

Target	Alias	Description	ECC score	Gene Family Method
Cba_g12027	EMB2780	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g01043	EMB2780	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
Dac_g21020	EMB2780	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Dde_g51710	EMB2780	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Len_g12780	EMB2780	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
Pp3c10_11570V3.1	EMB2780, Pp3c10_11570	DNA binding;nucleotide binding;nucleic acid...	0.03	OrthoFinder output from all 47 species
Pp3c10_25280V3.1	EMB2780, Pp3c10_25280	DNA binding;nucleotide binding;nucleic acid...	0.01	OrthoFinder output from all 47 species
Pp3c14_3970V3.1	Pp3c14_3970	No annotation	0.01	OrthoFinder output from all 47 species
Pp3c1_290V3.1	EMB2780, Pp3c1_290	DNA binding;nucleotide binding;nucleic acid...	0.02	OrthoFinder output from all 47 species
Pp3c25_2990V3.1	EMB2780, Pp3c25_2990	DNA binding;nucleotide binding;nucleic acid...	0.02	OrthoFinder output from all 47 species
Pp3c2_18826V3.1	Pp3c2_18826	DNA binding;nucleotide binding;nucleic acid...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR006133	DNA-dir_DNA_pol_B_exonuc	204	361
IPR006134	DNA-dir_DNA_pol_B_multi_dom	675	958
IPR006134	DNA-dir_DNA_pol_B_multi_dom	554	674

External Links

No external refs found!