1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00001532.12

Cpa|evm.model.tig00001532.12


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL9 component


Gene families : OG0001493 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001493_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001532.12
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00131950 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.28 OrthoFinder output from all 47 species
AMTR_s00048p00062300 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
AT1G33120 No alias Ribosomal protein L6 family 0.27 OrthoFinder output from all 47 species
AT1G33140 PGY2 Ribosomal protein L6 family 0.38 OrthoFinder output from all 47 species
AT4G10450 No alias Ribosomal protein L6 family 0.09 OrthoFinder output from all 47 species
Adi_g042779 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g042780 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Adi_g046740 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Adi_g082405 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g101794 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aev_g05674 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Aev_g08360 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g08837 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Als_g37907 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g46135 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g56567 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g56569 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g62254 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Aob_g00632 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g00197 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.24 OrthoFinder output from all 47 species
Aspi01Gene57067.t1 Aspi01Gene57067 component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0007.g011131 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.21 OrthoFinder output from all 47 species
Cba_g24600 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g39479 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Cba_g47735 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g59726 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g71155 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cba_g71228 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ceric.01G085000.1 Ceric.01G085000 component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.13G058300.1 Ceric.13G058300 component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.1Z004300.1 Ceric.1Z004300 component *(uL6) of large ribosomal-subunit (LSU)... 0.21 OrthoFinder output from all 47 species
Cre12.g494050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.38 OrthoFinder output from all 47 species
Dac_g00432 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Dcu_g11153 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dcu_g27021 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Dde_g08736 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01016795001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.23 OrthoFinder output from all 47 species
GSVIVT01038670001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
LOC_Os02g01332.1 LOC_Os02g01332 component RPL9 of LSU proteome component 0.09 OrthoFinder output from all 47 species
LOC_Os09g31180.1 LOC_Os09g31180 component RPL9 of LSU proteome component 0.35 OrthoFinder output from all 47 species
Len_g11716 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Len_g14020 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Len_g18415 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Len_g41927 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g22504 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_38141g0010 No alias component RPL9 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Mp4g24070.1 No alias component RPL9 of LSU proteome component 0.31 OrthoFinder output from all 47 species
Msp_g01791 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Msp_g02241 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Msp_g34146 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g06570 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g19909 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ore_g07770 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ore_g07771 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g01800 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pir_g07375 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g29031 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g60986 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Pp3c10_8500V3.1 Pp3c10_8500 Ribosomal protein L6 family 0.13 OrthoFinder output from all 47 species
Pp3c14_8600V3.1 Pp3c14_8600 Ribosomal protein L6 family 0.18 OrthoFinder output from all 47 species
Pp3c16_20070V3.1 Pp3c16_20070 Ribosomal protein L6 family 0.12 OrthoFinder output from all 47 species
Ppi_g20158 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g20199 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g20331 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Ppi_g28530 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g34050 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g49909 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Ppi_g56682 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004263 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015839 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g05554 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Sam_g11980 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.25 OrthoFinder output from all 47 species
Sam_g12947 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g12948 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Sam_g32375 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.19 OrthoFinder output from all 47 species
Sam_g42265 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g45551 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Smo269009 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder output from all 47 species
Solyc06g073310.3.1 Solyc06g073310 component RPL9 of LSU proteome component 0.39 OrthoFinder output from all 47 species
Solyc08g014550.3.1 Solyc08g014550 component RPL9 of LSU proteome component 0.22 OrthoFinder output from all 47 species
Solyc12g096700.2.1 Solyc12g096700 component RPL9 of LSU proteome component 0.41 OrthoFinder output from all 47 species
Spa_g22811 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.26 OrthoFinder output from all 47 species
Spa_g24089 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.21 OrthoFinder output from all 47 species
Spa_g28673 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Spa_g43562 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Tin_g00341 No alias component *(uL6) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Zm00001e025404_P001 Zm00001e025404 component RPL9 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Zm00001e029810_P003 Zm00001e029810 component RPL9 of LSU proteome component 0.26 OrthoFinder output from all 47 species
Zm00001e036699_P002 Zm00001e036699 component RPL9 of LSU proteome component 0.22 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 24 69
IPR020040 Ribosomal_L6_a/b-dom 81 160
No external refs found!