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  5. Cpa|evm.model.tig00001501.3

Cpa|evm.model.tig00001501.3 (MAC3B)


Aliases : MAC3B

Description : Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica


Gene families : OG0002806 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002806_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001501.3
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00212570 MAC3A,... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Adi_g088167 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05281 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13324 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g50451 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g05020 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.06G040200.1 MAC3A, Ceric.06G040200 E3 ubiquitin protein ligase *(PUB60) & original... 0.01 OrthoFinder output from all 47 species
Cre02.g073650 MAC3B RNA processing.RNA splicing.spliceosome-associated... 0.05 OrthoFinder output from all 47 species
Dcu_g02996 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23449 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
LOC_Os10g32880.1 MAC3A, LOC_Os10g32880 component MAC3 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
MA_20260g0010 MAC3A component MAC3 of non-snRNP MOS4-associated complex 0.01 OrthoFinder output from all 47 species
Mp4g08560.1 MAC3A component MAC3 of non-snRNP MOS4-associated complex 0.05 OrthoFinder output from all 47 species
Msp_g02452 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g02531 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15257 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g15271 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010488 MAC3A E3 ubiquitin protein ligase *(PUB60) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017747 MAC3B E3 ubiquitin protein ligase *(PUB60) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0429.g027376 MAC3B E3 ubiquitin protein ligase *(PUB60) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0777.g027689 MAC3B E3 ubiquitin protein ligase *(PUB60) & original... 0.02 OrthoFinder output from all 47 species
Smo437541 MAC3B RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Solyc09g090660.3.1 MAC3A, Solyc09g090660 component MAC3 of non-snRNP MOS4-associated complex 0.04 OrthoFinder output from all 47 species
Spa_g07858 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e004625_P001 MAC3B, Zm00001e004625 component MAC3 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
Zm00001e012723_P001 MAC3B, Zm00001e012723 component MAC3 of non-snRNP MOS4-associated complex 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP HCCA
MF GO:0000340 RNA 7-methylguanosine cap binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0015098 molybdate ion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
BP GO:0015689 molybdate ion transport IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0018279 protein N-linked glycosylation via asparagine IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 297 331
IPR001680 WD40_repeat 157 190
IPR001680 WD40_repeat 220 251
No external refs found!