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  5. Cpa|evm.model.tig00001497.8

Cpa|evm.model.tig00001497.8 (SWP1, ATLSD1, LDL1,...)


Aliases : SWP1, ATLSD1, LDL1, ATSWP1, LSD1

Description : Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica


Gene families : OG0003252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003252_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001497.8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00264590 LDL2,... Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
AMTR_s00015p00090420 FLD,... Chromatin organisation.histone modifications.histone... 0.01 OrthoFinder output from all 47 species
AT3G13682 LDL2 LSD1-like2 0.02 OrthoFinder output from all 47 species
Adi_g058521 FLD flowering time factor *(FLD) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087418 LDL2 histone demethylase *(KDM1a/b/c) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15512 FLD flowering time factor *(FLD) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19942 FLD flowering time factor *(FLD) & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g10783 FLD flowering time factor *(FLD) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016218001 FLD Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
Gb_40551 FLD lysine-specific demethylase (LDL/KDM1) 0.02 OrthoFinder output from all 47 species
LOC_Os04g47270.1 FLD, LOC_Os04g47270 lysine-specific demethylase (LDL/KDM1) 0.03 OrthoFinder output from all 47 species
MA_1921g0010 FLD lysine-specific demethylase (LDL/KDM1) 0.02 OrthoFinder output from all 47 species
Msp_g15910 FLD flowering time factor *(FLD) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08927 FLD flowering time factor *(FLD) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015890_P001 SWP1, ATLSD1,... lysine-specific demethylase (LDL/KDM1) 0.02 OrthoFinder output from all 47 species
Zm00001e040280_P001 LDL2, Zm00001e040280 lysine-specific demethylase (LDL/KDM1) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0008272 sulfate transport IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015116 sulfate transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0072348 sulfur compound transport IEP HCCA
MF GO:1901682 sulfur compound transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 35 109
IPR002937 Amino_oxidase 173 443
No external refs found!