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  5. Cpa|evm.model.tig00001155.2

Cpa|evm.model.tig00001155.2


Description : DExH-box ATP-dependent RNA helicase DExH11 OS=Arabidopsis thaliana


Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001155.2
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00125980 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.01 OrthoFinder output from all 47 species
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.01 OrthoFinder output from all 47 species
Adi_g017341 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.01 OrthoFinder output from all 47 species
Aev_g17654 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.01 OrthoFinder output from all 47 species
Aop_g27842 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.01 OrthoFinder output from all 47 species
Azfi_s0027.g023708 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.01 OrthoFinder output from all 47 species
Dcu_g12374 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.02 OrthoFinder output from all 47 species
MA_3056043g0010 HEN2 DExH-box ATP-dependent RNA helicase DExH10... 0.01 OrthoFinder output from all 47 species
Mp1g05510.1 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.01 OrthoFinder output from all 47 species
Nbi_g03153 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.01 OrthoFinder output from all 47 species
Pnu_g16077 HEN2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g32958 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.02 OrthoFinder output from all 47 species
Sam_g45216 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006665 sphingolipid metabolic process IEP HCCA
BP GO:0006672 ceramide metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
InterPro domains Description Start Stop
IPR012961 Ski2/MTR4_C 964 1127
IPR011545 DEAD/DEAH_box_helicase_dom 298 445
No external refs found!