Cpa|evm.model.tig00001067.18 (PHYC)

Aliases : PHYC

Description : Phytochrome C OS=Arabidopsis thaliana

Gene families : OG0000699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000699_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00001067.18

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00047p00076620	PHYC,...	External stimuli response.light.red/far red light.PHY...	0.02	OrthoFinder output from all 47 species
AMTR_s00047p00076760	PHYC,...	External stimuli response.light.red/far red light.PHY...	0.01	OrthoFinder output from all 47 species
Cba_g22887	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.10G020500.1	HY3, OOP1, PHYB,...	phytochrome photoreceptor *(PHY) & original description:...	0.01	OrthoFinder output from all 47 species
LOC_Os03g19590.1	HY3, OOP1, PHYB,...	phytochrome photoreceptor (PHY). temperature sensor...	0.01	OrthoFinder output from all 47 species
Len_g03402	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.01	OrthoFinder output from all 47 species
Pir_g11409	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g11691	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo161430	HY3, OOP1, PHYB	External stimuli response.temperature.temperature...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	HCCA
MF	GO:0004134	4-alpha-glucanotransferase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016763	pentosyltransferase activity	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013515	Phytochrome_cen-reg	333	441
IPR003018	GAF	139	277
IPR013654	PAS_2	29	77
IPR013656	PAS_4	466	562

External Links

No external refs found!