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  5. Cpa|evm.model.tig00001065.14

Cpa|evm.model.tig00001065.14 (PUM1, APUM1)


Aliases : PUM1, APUM1

Description : Pumilio homolog 1 OS=Arabidopsis thaliana


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001065.14

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0205.g057726 APUM2, PUM2 not classified & original description: CDS=300-3455 0.02 OrthoFinder output from all 47 species
Ceric.34G024000.1 PUM1, APUM1,... not classified & original description: pacid=50623863... 0.02 OrthoFinder output from all 47 species
LOC_Os01g74030.1 PUM1, APUM1,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g05799 APUM2, PUM2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g11828 PUM1, APUM1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0253.g026782 APUM2, PUM2 not classified & original description: CDS=660-3872 0.02 OrthoFinder output from all 47 species
Smo78497 APUM2, PUM2 Pumilio homolog 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Tin_g15133 APUM2, PUM2 not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 78 107
IPR001313 Pumilio_RNA-bd_rpt 113 143
IPR001313 Pumilio_RNA-bd_rpt 306 332
IPR001313 Pumilio_RNA-bd_rpt 187 218
IPR001313 Pumilio_RNA-bd_rpt 257 289
IPR001313 Pumilio_RNA-bd_rpt 149 181
IPR001313 Pumilio_RNA-bd_rpt 227 248
IPR001313 Pumilio_RNA-bd_rpt 51 74
No external refs found!