LOC_Os02g01740 (Os02g0106966, Os02g0107000)


Aliases : Os02g0106966, Os02g0107000

Description : 28.1 DNA.synthesis/chromatin structure embryo defective 1507 (emb1507)


Gene families : OG_01_0000762 (Gene family) Phylogenetic Tree(s): OG0000762_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os02g01740
Cluster HCCA cluster: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AT1G20960 emb1507 U5 small nuclear ribonucleoprotein helicase, putative 0.02 Gene family
AT5G61140 No alias U5 small nuclear ribonucleoprotein helicase 0.05 Gene family
Cpa|evm.model.tig00000865.27 No alias 28.1 DNA.synthesis/chromatin structure embryo defective... 0.04 Gene family
Cpa|evm.model.tig00000865.28 No alias 28.1 DNA.synthesis/chromatin structure embryo defective... 0.05 Gene family
Cre17.g744147 No alias 28.1 DNA.synthesis/chromatin structure embryo defective... 0.03 Gene family
GSVIVT01007875001 No alias 27.1.2 RNA.processing.RNA helicase Encodes a predicted... 0.04 Gene family
GSVIVT01010769001 No alias 28.1 DNA.synthesis/chromatin structure embryo defective... 0.1 Gene family
MA_81219g0020 No alias 28.1 DNA.synthesis/chromatin structure embryo defective... 0.04 Gene family
MA_823844g0010 No alias 27.1.2 RNA.processing.RNA helicase Encodes a predicted... 0.02 Gene family
Smo144158 PACid_15416200 28.1 DNA.synthesis/chromatin structure embryo defective... 0.04 Gene family
Smo178863 PACid_15410245 27.1.2 RNA.processing.RNA helicase Encodes a predicted... 0.05 Gene family
Smo410613 PACid_15407024 27.1.2 RNA.processing.RNA helicase Encodes a predicted... 0.04 Gene family
Solyc06g069480.3.1 Solyc06g069480.3 27.1.2 RNA.processing.RNA helicase Encodes a predicted... 0.03 Gene family
Solyc06g082100.3.1 Solyc06g082100.3 28.1 DNA.synthesis/chromatin structure embryo defective... 0.09 Gene family
Zm00001d022286 GRMZM2G026991 28.1 DNA.synthesis/chromatin structure embryo defective... 0.1 Gene family
Zm00001d048095 GRMZM5G857708,... 27.1.2 RNA.processing.RNA helicase Encodes a predicted... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
MF GO:0005524 ATP binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004179 Sec63-dom 1017 1317
IPR011545 DEAD/DEAH_box_helicase_dom 1364 1533
IPR011545 DEAD/DEAH_box_helicase_dom 520 694
IPR004179 Sec63-dom 1849 2167
IPR001650 Helicase_C 745 893
No external refs found!