Cpa|evm.model.tig00000889.52

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL17 component

Gene families : OG0002243 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002243_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00000889.52

Target	Alias	Description	ECC score	Gene Family Method
AT3G54210	No alias	Ribosomal protein L17 family protein	0.02	OrthoFinder output from all 47 species
Ala_g36982	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Als_g32904	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aspi01Gene15394.t1	Aspi01Gene15394	component *(bL17c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Azfi_s0132.g049286	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.01	OrthoFinder output from all 47 species
Ceric.39G012200.1	Ceric.39G012200	component *(uL17m) of large mitoribosomal-subunit...	0.01	OrthoFinder output from all 47 species
Cre02.g108850	No alias	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Dac_g01223	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dcu_g23921	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dde_g06743	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
GSVIVT01026526001	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
LOC_Os03g60100.1	LOC_Os03g60100	component psRPL17 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Lfl_g00441	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Lfl_g31145	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Mp8g05860.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Nbi_g05141	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.01	OrthoFinder output from all 47 species
Ore_g18563	No alias	component *(uL17m) of large mitoribosomal-subunit...	0.01	OrthoFinder output from all 47 species
Pir_g16791	No alias	component *(uL17m) of large mitoribosomal-subunit...	0.01	OrthoFinder output from all 47 species
Pir_g36278	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pp3c13_21730V3.1	Pp3c13_21730	Ribosomal protein L17 family protein	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g015014	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Solyc06g082750.3.1	Solyc06g082750	component psRPL17 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Spa_g04291	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Tin_g03061	No alias	component *(bL17c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Zm00001e011784_P001	Zm00001e011784	component psRPL17 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000456	Ribosomal_L17	78	174

External Links

No external refs found!

Cpa|evm.model.tig00000889.52

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation