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  5. Cpa|evm.model.tig00000857.20

Cpa|evm.model.tig00000857.20 (At-SR34, SRP34,...)


Aliases : At-SR34, SRP34, ATSRP34, SR34, SR1

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.SR30/34 splicing factor


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000857.20

Target Alias Description ECC score Gene Family Method Actions
AT1G02840 At-SR34, SRP34,... RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Ala_g13919 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20395 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g42235 SR34b, At-SR34b RNA splicing factor *(SR30/34) & original description: none 0.01 OrthoFinder output from all 47 species
Cre06.g278239 SR30, ATSRP30, At-SR30 RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Dac_g00635 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36549 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01038636001 At-SR34a, SR34a, SRp34a RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Gb_24206 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species
LOC_Os01g21420.1 SR30, ATSRP30,... SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species
MA_11621g0010 At-SR34a, SR34a, SRp34a SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species
MA_40046g0020 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.01 OrthoFinder output from all 47 species
Pir_g40457 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g45943 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g075090.1.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.01 OrthoFinder output from all 47 species
Spa_g17256 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g00604 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g19153 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e038219_P006 SR30, ATSRP30,... SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
CC GO:0030173 obsolete integral component of Golgi membrane IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 109 164
IPR000504 RRM_dom 15 57
No external refs found!