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  5. Cpa|evm.model.tig00000826.22

Cpa|evm.model.tig00000826.22 (PBC1)


Aliases : PBC1

Description : Protein degradation.26S proteasome.20S core protease.beta-type subunits.beta type-3 component


Gene families : OG0004036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004036_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000826.22

Target Alias Description ECC score Gene Family Method Actions
AT1G21720 PBC1 proteasome beta subunit C1 0.05 OrthoFinder output from all 47 species
Aop_g00275 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cba_g14022 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cre06.g267500 PBC1 Protein degradation.26S proteasome.20S core... 0.04 OrthoFinder output from all 47 species
Dcu_g35364 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Dde_g03144 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.01 OrthoFinder output from all 47 species
GSVIVT01008836001 PBC1 Protein degradation.26S proteasome.20S core... 0.03 OrthoFinder output from all 47 species
LOC_Os02g08520.1 PBC1, LOC_Os02g08520 component beta type-3 of 26S proteasome 0.03 OrthoFinder output from all 47 species
LOC_Os06g43570.1 PBC1, LOC_Os06g43570 component beta type-3 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Lfl_g00669 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.01 OrthoFinder output from all 47 species
Msp_g01419 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Nbi_g25160 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Pir_g53673 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.01 OrthoFinder output from all 47 species
Pp3c7_520V3.1 PBC1, Pp3c7_520 proteasome beta subunit C1 0.01 OrthoFinder output from all 47 species
Solyc04g009410.3.1 PBC1, Solyc04g009410 component beta type-3 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Zm00001e013846_P001 PBC1, Zm00001e013846 component beta type-3 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Zm00001e037487_P001 PBC1, Zm00001e037487 component beta type-3 of 26S proteasome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004129 cytochrome-c oxidase activity IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 7 187
No external refs found!