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  5. Cpa|evm.model.tig00000769.35

Cpa|evm.model.tig00000769.35


Description : WD repeat-containing protein 55 OS=Arabidopsis thaliana


Gene families : OG0005484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005484_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000769.35

Target Alias Description ECC score Gene Family Method Actions
AT2G34260 No alias transducin family protein / WD-40 repeat family protein 0.03 OrthoFinder output from all 47 species
Als_g02971 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14254 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene07390.t1 Aspi01Gene07390 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0531.g075826 No alias not classified & original description: CDS=125-1186 0.02 OrthoFinder output from all 47 species
Ehy_g12623 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41916 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g26833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g038750.3.1 Solyc02g038750 WD repeat-containing protein 55 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 102 119
No external refs found!