Cpa|evm.model.tig00000741.30 (DCL1, CAF, EMB76,...)

Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

No description available

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00000741.30

Target	Alias	Description	ECC score	Gene Family Method
AT5G20320	DCL4, ATDCL4	dicer-like 4	0.03	OrthoFinder output from all 47 species
Adi_g017408	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.01	OrthoFinder output from all 47 species
Aop_g06264	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.01	OrthoFinder output from all 47 species
Cba_g38723	DCL4, ATDCL4	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Ceric.01G108700.1	DCL4, ATDCL4,...	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Ceric.1Z277300.1	DCL1, CAF,...	not classified & original description: pacid=50600427...	0.03	OrthoFinder output from all 47 species
Ceric.1Z320500.1	DCL1, CAF,...	not classified & original description: pacid=50576981...	0.04	OrthoFinder output from all 47 species
Ceric.22G041000.1	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species
Cre07.g345900	DCL1, CAF,...	No description available	0.03	OrthoFinder output from all 47 species
Dac_g12567	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species
Dac_g43749	DCL1, CAF,...	not classified & original description: none	0.01	OrthoFinder output from all 47 species
GSVIVT01001045001	DCL4, ATDCL4	RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator...	0.02	OrthoFinder output from all 47 species
GSVIVT01035494001	ATDCL3, DCL3	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.02	OrthoFinder output from all 47 species
LOC_Os01g68120.1	ATDCL3, DCL3,...	endoribonuclease (DCL3)	0.01	OrthoFinder output from all 47 species
Len_g14815	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g28527	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.01	OrthoFinder output from all 47 species
Len_g35714	DCL1, CAF,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_10432726g0010	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp....	0.01	OrthoFinder output from all 47 species
MA_10437243g0010	DCL1, CAF,...	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.01	OrthoFinder output from all 47 species
MA_10437243g0020	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana...	0.01	OrthoFinder output from all 47 species
MA_108060g0010	DCL1, CAF,...	Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
Nbi_g07904	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.01	OrthoFinder output from all 47 species
Ore_g16091	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008352	ATDCL3, DCL3	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Smo448444	DCL1, CAF,...	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.02	OrthoFinder output from all 47 species
Zm00001e000158_P001	DCL1, CAF,...	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.04	OrthoFinder output from all 47 species
Zm00001e018890_P004	ATDCL3, DCL3,...	endoribonuclease (DCL3)	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006935	Helicase/UvrB_N	137	301

External Links

No external refs found!

Cpa|evm.model.tig00000741.30 (DCL1, CAF, EMB76,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation