Cpa|evm.model.tig00000711.41 (ATCAP-C, ATSMC4, SMC3, ATSMC3)


Aliases : ATCAP-C, ATSMC4, SMC3, ATSMC3

Description : Cell cycle.mitosis and meiosis.chromatin condensation.condensin I/II complex.CAP-C/SMC4 component


Gene families : OG0004748 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004748_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000711.41
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00079920 ATCAP-C, ATSMC4,... Cell cycle.mitosis and meiosis.chromatin... 0.04 OrthoFinder output from all 47 species
AT5G48600 ATCAP-C, ATSMC4,... structural maintenance of chromosome 3 0.03 OrthoFinder output from all 47 species
Adi_g019665 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.04 OrthoFinder output from all 47 species
Ala_g23510 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.07 OrthoFinder output from all 47 species
Als_g16126 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.06 OrthoFinder output from all 47 species
Aop_g09601 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.1 OrthoFinder output from all 47 species
Aspi01Gene04548.t1 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.05 OrthoFinder output from all 47 species
Azfi_s0093.g043172 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.04 OrthoFinder output from all 47 species
Ceric.07G037500.1 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.09 OrthoFinder output from all 47 species
Cre12.g493400 ATCAP-C, ATSMC4,... Cell cycle.mitosis and meiosis.chromatin... 0.05 OrthoFinder output from all 47 species
Dac_g01058 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.08 OrthoFinder output from all 47 species
Dcu_g14679 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.07 OrthoFinder output from all 47 species
GSVIVT01011408001 ATCAP-C, ATSMC4,... Cell cycle.mitosis and meiosis.chromatin... 0.06 OrthoFinder output from all 47 species
Gb_03310 ATCAP-C, ATSMC4,... component CAP-C/SMC4 of condensin I/II complex 0.11 OrthoFinder output from all 47 species
LOC_Os05g41750.1 ATCAP-C, ATSMC4,... component CAP-C/SMC4 of condensin I/II complex 0.06 OrthoFinder output from all 47 species
Len_g03914 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.06 OrthoFinder output from all 47 species
Lfl_g38059 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.03 OrthoFinder output from all 47 species
MA_10325649g0010 ATCAP-C, ATSMC4,... Structural maintenance of chromosomes protein 4... 0.02 OrthoFinder output from all 47 species
MA_257738g0010 ATCAP-C, ATSMC4,... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_317249g0010 ATCAP-C, ATSMC4,... component CAP-C/SMC4 of condensin I/II complex 0.06 OrthoFinder output from all 47 species
MA_7369647g0010 ATCAP-C, ATSMC4,... Structural maintenance of chromosomes protein 4... 0.04 OrthoFinder output from all 47 species
MA_82161g0010 ATCAP-C, ATSMC4,... Structural maintenance of chromosomes protein 4... 0.03 OrthoFinder output from all 47 species
Mp5g06430.1 ATCAP-C, ATSMC4,... component CAP-C/SMC4 of condensin I/II complex 0.06 OrthoFinder output from all 47 species
Msp_g32088 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.09 OrthoFinder output from all 47 species
Nbi_g09270 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.07 OrthoFinder output from all 47 species
Ppi_g09236 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g015991 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.04 OrthoFinder output from all 47 species
Sam_g07968 No alias component *(CAP-C/SMC4) of condensin I/II complex &... 0.05 OrthoFinder output from all 47 species
Solyc02g087980.3.1 ATCAP-C, ATSMC4,... component CAP-C/SMC4 of condensin I/II complex 0.06 OrthoFinder output from all 47 species
Spa_g10497 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.04 OrthoFinder output from all 47 species
Tin_g01288 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
CC GO:0000776 kinetochore IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005815 microtubule organizing center IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006515 protein quality control for misfolded or incompletely synthesized proteins IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0031144 proteasome localization IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
BP GO:0031503 protein-containing complex localization IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034453 microtubule anchoring IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071630 nuclear protein quality control by the ubiquitin-proteasome system IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 14 1219
IPR010935 SMC_hinge 556 603
No external refs found!