1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00000681.17

Cpa|evm.model.tig00000681.17 (TIC55-II)


Aliases : TIC55-II

Description : Protein TIC 55, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000770 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000770_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000681.17
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00127460 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.03 OrthoFinder output from all 47 species
AMTR_s00140p00074640 ACD1, PAO, LLS1,... Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll... 0.03 OrthoFinder output from all 47 species
AT3G44880 ACD1, PAO, LLS1 Pheophorbide a oxygenase family protein with Rieske... 0.02 OrthoFinder output from all 47 species
AT4G25650 TIC55-IV,... ACD1-like 0.02 OrthoFinder output from all 47 species
Adi_g118091 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21560 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11225 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11286 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13105 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08348 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17431 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05604 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g07297 TIC55-IV,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g08640 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04106.t1 TIC55-IV,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene10046.t1 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65972.t1 ACD1, PAO, LLS1,... pheophorbide a oxygenase *(PAO) & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g01937 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G036200.1 TIC55-IV,... not classified & original description: pacid=50589121... 0.02 OrthoFinder output from all 47 species
Ceric.23G050300.1 TIC55-IV,... not classified & original description: pacid=50610352... 0.02 OrthoFinder output from all 47 species
Ceric.27G047600.1 ACD1, PAO, LLS1,... pheophorbide a oxygenase *(PAO) & original description:... 0.03 OrthoFinder output from all 47 species
Cre10.g450550 ACD1, PAO, LLS1 Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre13.g583050 ACD1, PAO, LLS1 Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g05098 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12984 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g15141 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06958 TIC55-IV,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g23486 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06233 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15086 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07674 TIC55-IV,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g09870 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01025446001 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.05 OrthoFinder output from all 47 species
Gb_36694 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.02 OrthoFinder output from all 47 species
Gb_37383 ACD1, PAO, LLS1 Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_37385 ACD1, PAO, LLS1 Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os03g05310.1 ACD1, PAO, LLS1,... pheophorbide a oxygenase (PAO) 0.04 OrthoFinder output from all 47 species
LOC_Os03g59110.1 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.02 OrthoFinder output from all 47 species
LOC_Os03g59120.1 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.04 OrthoFinder output from all 47 species
Len_g21609 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06032 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g25027 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32038 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10436339g0010 ACD1, PAO, LLS1 pheophorbide a oxygenase (PAO) 0.01 OrthoFinder output from all 47 species
Msp_g16050 TIC55-IV,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g03610 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11029 TIC55-IV,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g04262 TIC55-IV,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g42852 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g09573 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g62298 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07246 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03794 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16471 TIC55-IV,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g29884 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41576 TIC55-IV,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g16661 No alias pheophorbide a oxygenase *(PAO) & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g18566 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39242 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g040160.4.1 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.04 OrthoFinder output from all 47 species
Spa_g15132 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08591 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000376_P001 ACD1, PAO, LLS1,... pheophorbide a oxygenase (PAO) 0.02 OrthoFinder output from all 47 species
Zm00001e006067_P001 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
InterPro domains Description Start Stop
IPR017941 Rieske_2Fe-2S 8 87
IPR013626 PaO 202 267
No external refs found!