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  5. Cpa|evm.model.tig00000615.67

Cpa|evm.model.tig00000615.67


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Sof1 assembly factor


Gene families : OG0004632 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004632_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000615.67

Target Alias Description ECC score Gene Family Method Actions
AT4G28450 No alias nucleotide binding;protein binding 0.02 OrthoFinder output from all 47 species
Ala_g05161 No alias SSU processome assembly factor *(SOF1) & original... 0.01 OrthoFinder output from all 47 species
Aop_g11970 No alias SSU processome assembly factor *(SOF1) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000988 No alias SSU processome assembly factor *(SOF1) & original... 0.02 OrthoFinder output from all 47 species
Cba_g00938 No alias SSU processome assembly factor *(SOF1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.02G115500.1 Ceric.02G115500 SSU processome assembly factor *(SOF1) & original... 0.02 OrthoFinder output from all 47 species
Cre07.g318702 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Ehy_g01244 No alias SSU processome assembly factor *(SOF1) & original... 0.01 OrthoFinder output from all 47 species
GSVIVT01020601001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os01g13730.1 LOC_Os01g13730 SSU processome assembly factor (SOF1) 0.03 OrthoFinder output from all 47 species
MA_920920g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp5g11980.1 No alias SSU processome assembly factor (SOF1) 0.04 OrthoFinder output from all 47 species
Sam_g29902 No alias SSU processome assembly factor *(SOF1) & original... 0.01 OrthoFinder output from all 47 species
Solyc07g053660.3.1 Solyc07g053660 SSU processome assembly factor (SOF1) 0.03 OrthoFinder output from all 47 species
Tin_g10131 No alias SSU processome assembly factor *(SOF1) & original... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 315 351
IPR001680 WD40_repeat 61 95
IPR001680 WD40_repeat 100 136
IPR001680 WD40_repeat 276 308
IPR007287 Sof1 352 438
No external refs found!