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  5. Cpa|evm.model.tig00000605.6

Cpa|evm.model.tig00000605.6


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF14 component


Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000605.6
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
AT2G22680 No alias Zinc finger (C3HC4-type RING finger) family protein 0.01 OrthoFinder output from all 47 species
Cre12.g500550 No alias No description available 0.03 OrthoFinder output from all 47 species
Dde_g48753 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g49144 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Gb_04078 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
LOC_Os08g03260.1 LOC_Os08g03260 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
LOC_Os10g32740.1 LOC_Os10g32740 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_181088g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_8215965g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Ore_g20735 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g38497 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52375 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc05g056140.4.1 Solyc05g056140 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc11g069600.2.1 Solyc11g069600 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Zm00001e023647_P001 Zm00001e023647 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e041206_P001 Zm00001e041206 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR005033 YEATS 228 304
IPR002035 VWF_A 58 135
No external refs found!