Aliases : NFD03, HMGB3, NFD3
Description : FACT complex subunit SSRP1 OS=Vicia faba
Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00093p00057150 | evm_27.TU.AmTr_v1... | High mobility group B protein 6 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
AT4G11080 | No alias | HMG (high mobility group) box protein | 0.01 | OrthoFinder output from all 47 species | |
AT4G23800 | No alias | HMG (high mobility group) box protein | 0.03 | OrthoFinder output from all 47 species | |
AT5G05330 | No alias | HMG-box (high mobility group) DNA-binding family protein | 0.02 | OrthoFinder output from all 47 species | |
Adi_g124291 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.01 | OrthoFinder output from all 47 species | |
Adi_g125155 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ala_g04363 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Als_g10080 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Als_g44054 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g06071 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Aop_g23124 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g38218 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g48668 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene26055.t1 | NFD03, HMGB3,... | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene48018.t1 | NFD4, HMGB4,... | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Cre16.g672300 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g10942 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.01 | OrthoFinder output from all 47 species | |
Dcu_g36188 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g40639 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g49727 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Dde_g47558 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01019504001 | No alias | High mobility group B protein 13 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01026642001 | NFD2, HMG BETA... | HMG1/2-like protein OS=Glycine max | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01034361001 | HMGB6 | High mobility group B protein 7 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
Gb_00374 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.05 | OrthoFinder output from all 47 species | |
Gb_05796 | NFD2, HMG BETA... | High mobility group B protein 1 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os02g15810.1 | LOC_Os02g15810 | High mobility group B protein 13 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
Len_g04502 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Len_g11004 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.01 | OrthoFinder output from all 47 species | |
Len_g16826 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Len_g23493 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Len_g30940 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g24536 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
MA_783123g0010 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
MA_86565g0010 | HMGB6 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
Mp2g12330.1 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g01263 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Msp_g38531 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g06088 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g12748 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g22023 | NFD4, HMGB4, NFD04 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ore_g42111 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g26648 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g06141 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g17368 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Sam_g27294 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Sam_g31468 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g36464 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g40555 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Smo73858 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
Solyc04g008820.3.1 | HMGB6, Solyc04g008820 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g04270 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Spa_g10432 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g46241 | ATHMG, HMG, SSRP1, NFD | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Tin_g03032 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e014266_P001 | Zm00001e014266 | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e024274_P002 | HMGB6, Zm00001e024274 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003777 | microtubule motor activity | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
BP | GO:0006260 | DNA replication | IEP | HCCA |
BP | GO:0007018 | microtubule-based movement | IEP | HCCA |
MF | GO:0008017 | microtubule binding | IEP | HCCA |
MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
MF | GO:0015631 | tubulin binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR009071 | HMG_box_dom | 700 | 770 |
No external refs found! |