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  5. Cpa|evm.model.tig00000498.87

Cpa|evm.model.tig00000498.87 (RABF2B, ATRAB-F2B,...)


Aliases : RABF2B, ATRAB-F2B, RAB-F2B, ATRABF2B, ARA7, ARA-7, ATRAB5B

Description : Ras-related protein RABF2b OS=Arabidopsis thaliana


Gene families : OG0001928 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001928_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000498.87
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AT5G45130 RAB5A, RHA1,... RAB homolog 1 0.03 OrthoFinder output from all 47 species
Adi_g082867 RABF2B,... vesicle tethering small GTPase *(RAB5) & original... 0.02 OrthoFinder output from all 47 species
Adi_g113903 RABF2B,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g06832 RABF2B,... vesicle tethering small GTPase *(RAB5) & original... 0.01 OrthoFinder output from all 47 species
Cba_g37024 RABF2B,... vesicle tethering small GTPase *(RAB5) & original... 0.02 OrthoFinder output from all 47 species
Ceric.01G125600.1 RABF2B,... vesicle tethering small GTPase *(RAB5) & original... 0.02 OrthoFinder output from all 47 species
Dac_g26294 RABF2B,... vesicle tethering small GTPase *(RAB5) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01035267001 RABF2B,... Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
LOC_Os03g46390.1 RABF2B,... F-class RAB GTPase 0.01 OrthoFinder output from all 47 species
Nbi_g04008 RABF2B,... vesicle tethering small GTPase *(RAB5) & original... 0.01 OrthoFinder output from all 47 species
Sam_g13038 No alias vesicle tethering small GTPase *(RAB5) & original... 0.01 OrthoFinder output from all 47 species
Solyc02g069370.3.1 RABF2B,... F-class RAB GTPase 0.01 OrthoFinder output from all 47 species
Zm00001e012317_P001 RABF2B,... F-class RAB GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0008535 respiratory chain complex IV assembly IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
BP GO:0033617 mitochondrial cytochrome c oxidase assembly IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 471 568
No external refs found!