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  5. Cpa|evm.model.tig00000480.60

Cpa|evm.model.tig00000480.60 (emb1644)


Aliases : emb1644

Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm4 component


Gene families : OG0005093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005093_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000480.60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00214370 emb1644,... RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
AT5G27720 emb1644 Small nuclear ribonucleoprotein family protein 0.01 OrthoFinder output from all 47 species
Adi_g117216 emb1644 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g24638 emb1644 component *(LSm4) of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Als_g31218 emb1644 component *(LSm4) of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Aop_g29927 emb1644 component *(LSm4) of U6-associated LSm accessory... 0.01 OrthoFinder output from all 47 species
Aspi01Gene17196.t1 emb1644, Aspi01Gene17196 component *(LSm4) of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Cba_g25383 emb1644 component *(LSm4) of U6-associated LSm accessory... 0.01 OrthoFinder output from all 47 species
Ceric.34G061500.1 emb1644, Ceric.34G061500 component *(LSm4) of U6-associated LSm accessory... 0.01 OrthoFinder output from all 47 species
Cre06.g251300 emb1644 RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Dcu_g13273 emb1644 component *(LSm4) of U6-associated LSm accessory... 0.01 OrthoFinder output from all 47 species
Dde_g25879 emb1644 component *(LSm4) of U6-associated LSm accessory... 0.01 OrthoFinder output from all 47 species
GSVIVT01027986001 emb1644 RNA processing.RNA splicing.U6-associated LSm accessory... 0.01 OrthoFinder output from all 47 species
Mp1g27390.1 emb1644 component LSm4 of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Tin_g12470 emb1644 component *(LSm4) of U6-associated LSm accessory... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 6 69
No external refs found!