1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00000455.18

Cpa|evm.model.tig00000455.18 (RAB1C, ATRAB1C, ATRABD2C)


Aliases : RAB1C, ATRAB1C, ATRABD2C

Description : Ras-related protein RABD2c OS=Arabidopsis thaliana


Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000455.18
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT5G47200 ATRAB1A, ATRABD2B, RAB1A RAB GTPase homolog 1A 0.02 OrthoFinder output from all 47 species
Adi_g010705 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g046907 RAB1C, ATRAB1C, ATRABD2C not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g24852 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene62085.t2 ATRAB1B, RABD2A,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.38G045700.1 RAB1C, ATRAB1C,... D-class RAB GTPase & original description:... 0.02 OrthoFinder output from all 47 species
GSVIVT01013868001 RAB1C, ATRAB1C, ATRABD2C Vesicle trafficking.regulation of membrane tethering and... 0.01 OrthoFinder output from all 47 species
Gb_15477 ATRAB1B, RABD2A,... D-class RAB GTPase 0.02 OrthoFinder output from all 47 species
LOC_Os02g43690.3 ATRAB1B, RABD2A,... GTP-binding protein YPTM2 OS=Zea mays... 0.01 OrthoFinder output from all 47 species
Lfl_g22787 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Mp3g00710.1 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010839 ATRAB1B, RABD2A,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014533 RAB1C, ATRAB1C, ATRABD2C not classified & original description: CDS=274-789 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP HCCA
MF GO:0000340 RNA 7-methylguanosine cap binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0018279 protein N-linked glycosylation via asparagine IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 11 170
No external refs found!