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  5. Cpa|evm.model.tig00000441.11

Cpa|evm.model.tig00000441.11


Description : DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica


Gene families : OG0005389 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005389_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000441.11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00225030 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Aop_g12658 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Azfi_s0285.g063130 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.01 OrthoFinder output from all 47 species
Cba_g76143 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000441.12 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Cre07.g314900 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Dcu_g01592 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
GSVIVT01008218001 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
MA_109969g0010 No alias DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ppi_g49259 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.01 OrthoFinder output from all 47 species
Smo104808 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Tin_g30854 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.01 OrthoFinder output from all 47 species
Zm00001e011842_P001 Zm00001e011842 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0036265 RNA (guanine-N7)-methylation IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
BP GO:0070476 rRNA (guanine-N7)-methylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR025313 DUF4217 199 257
IPR001650 Helicase_C 69 172
No external refs found!