LOC_Os01g70270 (Os01g0927600)


Aliases : Os01g0927600

Description : 27.3.4 RNA.regulation of transcription.ARF, Auxin Response Factor family Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation. auxin response factor 2 (ARF2)


Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os01g70270
Cluster HCCA cluster: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AT5G62000 HSS, ARF1-BP, ARF2, ORE14 auxin response factor 2 0.03 Gene family
GSVIVT01008950001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
GSVIVT01037136001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
MA_40335g0010 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Solyc04g081235.1.1 Solyc04g081235.1 No description available 0.03 Gene family
Zm00001d036593 GRMZM2G089640 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Zm00001d041056 GRMZM2G352159 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
CC GO:0005634 nucleus IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
BP GO:0009725 response to hormone IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 129 230
IPR033389 AUX/IAA_dom 673 728
IPR033389 AUX/IAA_dom 734 777
IPR010525 Auxin_resp 255 336
No external refs found!