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  5. Cpa|evm.model.tig00000269.111

Cpa|evm.model.tig00000269.111


Description : COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana


Gene families : OG0004632 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004632_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000269.111

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene28730.t1 Aspi01Gene28730 SSU processome assembly factor *(SOF1) & original... 0.01 OrthoFinder output from all 47 species
Azfi_s0001.g000988 No alias SSU processome assembly factor *(SOF1) & original... 0.01 OrthoFinder output from all 47 species
Gb_30586 No alias SSU processome assembly factor (SOF1) 0.02 OrthoFinder output from all 47 species
LOC_Os01g13730.1 LOC_Os01g13730 SSU processome assembly factor (SOF1) 0.02 OrthoFinder output from all 47 species
Lfl_g14091 No alias SSU processome assembly factor *(SOF1) & original... 0.03 OrthoFinder output from all 47 species
MA_95340g0010 No alias SSU processome assembly factor (SOF1) 0.02 OrthoFinder output from all 47 species
Zm00001e006402_P001 Zm00001e006402 SSU processome assembly factor (SOF1) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0008064 regulation of actin polymerization or depolymerization IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0030832 regulation of actin filament length IEP HCCA
BP GO:0030833 regulation of actin filament polymerization IEP HCCA
BP GO:0032271 regulation of protein polymerization IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0032956 regulation of actin cytoskeleton organization IEP HCCA
BP GO:0032970 regulation of actin filament-based process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
BP GO:0043254 regulation of protein-containing complex assembly IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051493 regulation of cytoskeleton organization IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
BP GO:0110053 regulation of actin filament organization IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902903 regulation of supramolecular fiber organization IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 166 194
IPR001680 WD40_repeat 246 281
IPR001680 WD40_repeat 118 154
IPR001680 WD40_repeat 40 71
IPR001680 WD40_repeat 200 234
IPR001680 WD40_repeat 77 113
No external refs found!