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ECC Pair graph <span class="text-muted">(advanced)</span></a></li> <li class="divider"></li> <li><a href="/blast/">BLAST</a></li> </ul> </li> </ul> <ul class="nav navbar-nav navbar-right"> <li> <form class="navbar-form" role="search" method="post" id="search-form" name="search-form" action="/search/"> <input id="csrf_token" name="csrf_token" type="hidden" value="IjRhYWJjZTczMGZhNmJlNzRmNzA2ZWM5ZWFiMzAwNjk1OTI0ZjY0ZDMi.GmztFQ.zjmFHVKJrVr6JuG6RBTaCxqxIbI"> <div class="form-group input-group"> <input class="form-control" id="terms" name="terms" placeholder="Search" required type="text" value> <div class="input-group-btn"><button type="submit" class="btn btn-primary" value="Search" data-toggle="modal" data-target="#loaderModal"><i class="fa fa-search"></i></button></div> </div> </form> </li> <li> <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">Help <span class="caret"></span></a> <ul class="dropdown-menu"> <li><a href="https://github.com/sepro/CoNekT/blob/master/docs/tutorials/overview.md">Tutorial <span class="text-muted"></span></a></li> <li><a href="/contact">Contact</a></li> </li> </ul> </li> <li class="dropdown"> </li> </ul> </div> </div> </div> <div class="container"> </div> <div class="container"> <div class="top-pad"> <div class="sidebar-sequence" id="sidebar"> <p>Jump to ...</p> <nav id="navbar-side"> <ul class="nav nav-pills nav-stacked" data-spy="affix"> <li><a href="#expression_profile">Profile</a></li> <li><a href="#coexpression_networks">Networks</a></li> <li><a href="#annotation">Annotation</a></li> <li><a href="#links">Links</a></li> </ul> </nav> </div> <ol class="breadcrumb"> <li><a href="/">Home</a></li> <li><a href="/species/">Species</a></li> <li><a href="/species/view/28"><em>Cyanophora paradoxa</em></a></li> <li>Sequence</li> <li class="active"><strong>Cpa|evm.model.tig00000246.12</strong></li> </ol> <h1><strong>Cpa|evm.model.tig00000246.12</strong></h1> <br> <p><span class="text-muted"><em>No description available</em></span></p> <br> <div> <p><strong><abbr title="Click to show help" href="/help/gene_family" data-target="#helpModal">Gene families</abbr> : </strong><a href="/family/view/1250048">OG0020447</a> (OrthoFinder output from all 47 species) Phylogenetic Tree(s): <a href="/tree/view/662127">OG0020447_tree</a> </p> <p><strong>Sequence :</strong> <a href="/sequence/modal/coding/1405046" data-target="#profileModal">coding</a> (<a href="/sequence/fasta/coding/1405046">download</a>), <a href="/sequence/modal/protein/1405046" data-target="#profileModal">protein</a> (<a href="/sequence/fasta/protein/1405046">download</a>) </p> </div> <h3 class="banner-blue" id="expression_profile">Expression Profile</h3> <div class="pull-right"> <a href="#" class="btn btn-default" id="enable_pan" data-toggle="tooltip" title="Toggle Pan"><i class="fa fa-arrows" aria-hidden="true"></i></a> <a href="#" class="btn btn-default" id="enable_zoom" data-toggle="tooltip" title="Toggle zoom"><i class="fa fa-search" aria-hidden="true"></i></a> </div> <div style="height:550px; max-height:550px; margin-top:30px"> <canvas id="expression-profile" class="center-block" height="550"/> </div> <br> <div class="pull-right"> <a href="/profile/download/plot/206038" class="btn btn-primary" download="plot_206038.txt">Download</a> </div> <p><strong>Note:</strong>Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available <a href="/profile/view/206038">here</a>.</p> <br> <div> <h3 class="banner-blue" id="coexpression_networks">Co-expression Networks</h3> <div class="table-responsive"> <table class="table table-striped table-separated" id="coexpression_table"> <thead> <tr> <th data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th>Actions</th> </tr> </thead> <tbody> <tr> <td><abbr title="Click to show help" href="/help/neighborhood" data-target="#helpModal">Neighborhood</abbr></td> <td>HRR: <strong>Cpa|evm.model.tig00000246.12</strong></td> <td><a href="/network/download/neighbors/3090588" data-toggle="tooltip" data-placement="top" title="Download direct neighbors" download="neighbors_3090588.txt"><i class="fa fa-list"></i></span> <a href="/network/graph/3090588" data-toggle="tooltip" data-placement="top" title="View neighborhood as graph"><i class="fa fa-sitemap"></i></a> <span class="text-muted" data-toggle="tooltip" data-placement="top" title="Disabled for neighborhoods"><i class="fa fa-area-chart"></i></span> <span class="text-muted" data-toggle="tooltip" data-placement="top" title="Disabled for neighborhoods"><i class="fa fa-table"></i></span></td> </tr> <tr> <td><abbr title="Click to show help" href="/help/cluster" data-target="#helpModal">Cluster</abbr></td> <td>HCCA: <strong><a href="/cluster/view/40500" class="qtip_tooltip" qtip_href="/cluster/tooltip/40500">Cluster_44</a></strong></td> <td><a href="/cluster/view/40500" data-toggle="tooltip" data-placement="top" title="View cluster as table"><i class="fa fa-list"></i></a> <a href="/cluster/graph/40500" data-toggle="tooltip" data-placement="top" title="View cluster as graph"><i class="fa fa-sitemap"></i></a> <a href="/profile_comparison/cluster/40500" data-toggle="tooltip" data-placement="top" title="Compare profiles in this cluster"><i class="fa fa-area-chart"></i></a> <a href="/heatmap/cluster/40500" data-toggle="tooltip" data-placement="top" title="Heatmap of profiles in this cluster"><i class="fa fa-table"></i></a></td> </tr> </tbody> </table> </div> </div> <br> <br> <h3 class="banner-blue" id="annotation">Functional Annotation</h3> <div class="panel with-nav-tabs panel-default"> <div class="panel-heading"> <ul class="nav nav-tabs"> <li class="active"><a href="#tab1default" data-toggle="tab">GO</a></li> <li><a href="#tab2default" data-toggle="tab">Predicted GO</a></li> <li><a href="#tab3default" data-toggle="tab">InterPro</a></li> </ul> </div> <div> <div class="tab-content"> <div class="tab-pane fade in active" id="tab1default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr> <td class="col-xs-12"><p>No GO annotation available for this sequence</p></td> </tr> </tbody> </table> </div> <div class="panel-body"> <a href="#" id="go_toggle">Toggle parental</a> </div> </div> <div class="tab-pane fade" id="tab2default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="predicted_go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/127" data-toggle="tooltip" data-placement="top" title=""Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response." [GOC:bf, GOC:mcc, PMID:10966457, PMID:20223701, PMID:9191038]">GO:0000155</a></td> <td class="col-xs-6">phosphorelay sensor kinase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/367" data-toggle="tooltip" data-placement="top" title=""A protein complex that possesses DNA-directed RNA polymerase activity." [GOC:krc]">GO:0000428</a></td> <td class="col-xs-6">DNA-directed RNA polymerase complex</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/2808" data-toggle="tooltip" data-placement="top" title=""Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'." [EC:2.7.7.6, GOC:pf]">GO:0003899</a></td> <td class="col-xs-6">DNA-directed 5'-3' RNA polymerase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/3371" data-toggle="tooltip" data-placement="top" title=""Catalysis of the hydrolysis of any O-glycosyl bond." [GOC:mah]">GO:0004553</a></td> <td class="col-xs-6">hydrolase activity, hydrolyzing O-glycosyl compounds</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/3480" data-toggle="tooltip" data-placement="top" title=""Catalysis of the reaction: ATP + protein L-histidine = ADP + protein phospho-L-histidine." [EC:2.7.13.3, GOC:mah]">GO:0004673</a></td> <td class="col-xs-6">protein histidine kinase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/4243" data-toggle="tooltip" data-placement="top" title=""RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template." [GOC:krc, GOC:mtg_sensu]">GO:0005666</a></td> <td class="col-xs-6">RNA polymerase III complex</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/4853" data-toggle="tooltip" data-placement="top" title=""The synthesis of an RNA transcript from a DNA template." [GOC:jl, GOC:txnOH]">GO:0006351</a></td> <td class="col-xs-6">DNA-templated transcription</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/4880" data-toggle="tooltip" data-placement="top" title=""The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter." [GOC:jl, GOC:txnOH, PMID:12381659]">GO:0006383</a></td> <td class="col-xs-6">transcription by RNA polymerase III</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5567" data-toggle="tooltip" data-placement="top" title=""The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell." [GOC:go_curators, GOC:mtg_signaling_feb11]">GO:0007165</a></td> <td class="col-xs-6">signal transduction</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/10495" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a nitrogenous group (acceptor)." [GOC:jl]">GO:0016775</a></td> <td class="col-xs-6">phosphotransferase activity, nitrogenous group as acceptor</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/10514" data-toggle="tooltip" data-placement="top" title=""Catalysis of the hydrolysis of any glycosyl bond." [GOC:jl]">GO:0016798</a></td> <td class="col-xs-6">hydrolase activity, acting on glycosyl bonds</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/14181" data-toggle="tooltip" data-placement="top" title=""Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits." [GOC:mah]">GO:0030880</a></td> <td class="col-xs-6">RNA polymerase complex</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/17192" data-toggle="tooltip" data-placement="top" title=""Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template, via extension of the 3'-end." [EC:2.7.7.6, GOC:mah, GOC:pf]">GO:0034062</a></td> <td class="col-xs-6">5'-3' RNA polymerase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/28800" data-toggle="tooltip" data-placement="top" title=""A protein complex, located in the nucleus, that possesses DNA-directed RNA polymerase activity." [GOC:mtg_sensu]">GO:0055029</a></td> <td class="col-xs-6">nuclear DNA-directed RNA polymerase complex</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/30543" data-toggle="tooltip" data-placement="top" title=""A transferase complex capable of catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor)." [GOC:bhm, GOC:dph]">GO:0061695</a></td> <td class="col-xs-6">transferase complex, transferring phosphorus-containing groups</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/35648" data-toggle="tooltip" data-placement="top" title=""The synthesis of an RNA transcript from a nucleic acid template (DNA or RNA)." [GOC:pr, GOC:txnOH, GOC:vw]">GO:0097659</a></td> <td class="col-xs-6">nucleic acid-templated transcription</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/35733" data-toggle="tooltip" data-placement="top" title=""Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template." [GOC:pf]">GO:0097747</a></td> <td class="col-xs-6">RNA polymerase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/38724" data-toggle="tooltip" data-placement="top" title=""Binding to a small molecule and eliciting a change in the protein's activity in response to the intracellular level of that small molecule." [PMID:26328879]">GO:0140299</a></td> <td class="col-xs-6">small molecule sensor activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/38888" data-toggle="tooltip" data-placement="top" title=""A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together in the nucleus." [GOC:pg]">GO:0140513</a></td> <td class="col-xs-6">nuclear protein-containing complex</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/38904" data-toggle="tooltip" data-placement="top" title=""A protein-containing complex located intracellularly." [GOC:pg]">GO:0140535</a></td> <td class="col-xs-6">intracellular protein-containing complex</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/45427" data-toggle="tooltip" data-placement="top" title=""A protein complex capable of catalyzing the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor)." [GOC:bhm, PMID:16540464]">GO:1990234</a></td> <td class="col-xs-6">transferase complex</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> </tbody> </table> </div> </div> <div class="tab-pane fade" id="tab3default"> <div class="panel-body"> <p>No InterPro domains available for this sequence</p> </div> </div> </div> </div> </div> <div class="row"> <div class="col-lg-12 col-md-12 col-sm-12"> <div class="panel panel-default"> <div class="panel-heading" id="links">External Links</div> <div class="table-responsive"> <table class="table table-striped table-separated"> <tbody> <tr> <td><em>No external refs found!</em></td> </td> </tr> </tbody> </table> </div> </div> </div> </div> <div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script> function init_qtip() { $('.qtip_tooltip').each(function() { $(this).qtip({ content: { text: function(event, api) { $.ajax({ url: api.elements.target.attr('qtip_href') }) .then(function(content) { // Set the tooltip content upon successful retrieval api.set('content.text', content); 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