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  5. Cpa|evm.model.tig00000219.44

Cpa|evm.model.tig00000219.44


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIf basal transcription factor complex.beta subunit


Gene families : OG0005394 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005394_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000219.44
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Cba_g01858 No alias subunit beta of TFIIf basal transcription factor complex... 0.01 OrthoFinder output from all 47 species
Dac_g06979 No alias subunit beta of TFIIf basal transcription factor complex... 0.02 OrthoFinder output from all 47 species
MA_10429881g0030 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g13830.1 No alias subunit beta of TFIIf basal transcription factor complex 0.02 OrthoFinder output from all 47 species
Zm00001e027383_P001 Zm00001e027383 subunit beta of TFIIf basal transcription factor complex 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
InterPro domains Description Start Stop
IPR040450 TFIIF_beta_HTH 275 328
No external refs found!