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  5. Cpa|evm.model.tig00000204.28

Cpa|evm.model.tig00000204.28


Description : Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000190 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000190_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000204.28
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AT4G23420 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.01 OrthoFinder output from all 47 species
Aob_g01549 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g15864 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05416 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g22454 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0100.g044329 No alias not classified & original description: CDS=98-1093 0.01 OrthoFinder output from all 47 species
Ceric.22G021900.1 Ceric.22G021900 not classified & original description: pacid=50615258... 0.03 OrthoFinder output from all 47 species
Dcu_g22250 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01007686001 No alias Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum 0.01 OrthoFinder output from all 47 species
GSVIVT01028899001 No alias Protein translocation.chloroplast.inner envelope TIC... 0.02 OrthoFinder output from all 47 species
LOC_Os09g39670.1 LOC_Os09g39670 component Tic32 of inner envelope TIC translocation system 0.01 OrthoFinder output from all 47 species
Msp_g31463 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pp3c18_15700V3.1 Pp3c18_15700 NAD(P)-binding Rossmann-fold superfamily protein 0.01 OrthoFinder output from all 47 species
Smo96850 No alias Short-chain dehydrogenase TIC 32, chloroplastic... 0.06 OrthoFinder output from all 47 species
Tin_g15683 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002280_P001 Zm00001e002280 Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0008716 D-alanine-D-alanine ligase activity IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
InterPro domains Description Start Stop
IPR002347 SDR_fam 69 260
No external refs found!