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  5. Cpa|evm.model.tig00000144.21

Cpa|evm.model.tig00000144.21


Description : Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana


Gene families : OG0001527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001527_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000144.21

Target Alias Description ECC score Gene Family Method Actions
Adi_g056332 PTB1, PTB, ATPTB1 RNA splicing factor *(PTB) & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g10377 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g16201 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G093000.1 PTB2, ATPTB2,... RNA splicing factor *(PTB) & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g11645 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11646 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04595 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.01 OrthoFinder output from all 47 species
LOC_Os01g43170.1 PTB2, ATPTB2,... PTB-type RNA splicing factor 0.02 OrthoFinder output from all 47 species
LOC_Os03g25980.2 PTB1, PTB,... PTB-type RNA splicing factor 0.01 OrthoFinder output from all 47 species
Len_g14452 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08278 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g09607 No alias RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g088110.4.1 PTB1, PTB,... PTB-type RNA splicing factor 0.02 OrthoFinder output from all 47 species
Solyc03g007320.4.1 PTB2, ATPTB2,... PTB-type RNA splicing factor 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
InterPro domains Description Start Stop
IPR021790 PTBP1-like_RRM2 100 187
IPR000504 RRM_dom 22 66
No external refs found!