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  5. Cpa|evm.model.tig00000057.48

Cpa|evm.model.tig00000057.48 (EMB2776, LIS)


Aliases : EMB2776, LIS

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).PRPF4 snRNP component


Gene families : OG0003984 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003984_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000057.48

Target Alias Description ECC score Gene Family Method Actions
Len_g00042 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13194 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.02 OrthoFinder output from all 47 species
Zm00001e001685_P005 EMB2776, LIS,... protein factor PRPF4 of U4/U6 small nuclear... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0098519 obsolete nucleotide phosphatase activity, acting on free nucleotides IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 360 389
IPR001680 WD40_repeat 315 346
IPR001680 WD40_repeat 441 477
IPR001680 WD40_repeat 227 252
IPR014906 PRP4-like 115 142
No external refs found!