Cpa|evm.model.tig00000025.1 (ATPGP4, PGP4, ABCB4, MDR4)

Aliases : ATPGP4, PGP4, ABCB4, MDR4

Description : Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00000025.1
Cluster	HCCA: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
AT3G62150	PGP21	P-glycoprotein 21	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000293.10	PGP11	Solute transport.primary active transport.ABC...	0.04	OrthoFinder output from all 47 species
Dac_g12528	ABCB19,...	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Dac_g19941	NAP8, ATNAP8	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g17218	ABCB19,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01021366001	PGP9	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
LOC_Os01g52550.1	LOC_Os01g52550	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
LOC_Os03g17180.1	PGP20, LOC_Os03g17180	subfamily ABCB transporter	0.01	OrthoFinder output from all 47 species
Msp_g17749	ABCB19,...	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Msp_g32548	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g35626	PGP9	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Pp3c17_16450V3.1	ABCB19,...	ATP binding cassette subfamily B19	0.01	OrthoFinder output from all 47 species
Smo408755	No alias	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	14	198
IPR011527	ABC1_TM_dom	694	768
IPR003439	ABC_transporter-like_ATP-bd	287	439

External Links

No external refs found!