AMTR_s00001p00155170 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.140

Description : Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0011968 (LandPlants) Phylogenetic Tree(s): OG_02_0011968_tree ,
OG_03_0000000 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00155170
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00036710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
AT3G61170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Gb_00862 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_27880 No alias RNA editing factor (ECB2/VAC1) 0.04 Archaeplastida
Gb_27891 No alias RNA editing factor (OTP86) 0.02 Archaeplastida
Gb_39402 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
LOC_Os01g41650.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_10164206g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_138676g0010 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
MA_17949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_18165g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_31170g0010 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
MA_322292g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_525914g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_65500g0010 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.02 Archaeplastida
MA_71104g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_8319g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_86628g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_94165g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_9526611g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_958908g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Smo125997 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Smo131170 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Smo82072 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Smo96927 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 Archaeplastida
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.02 Archaeplastida
GSVIVT01036757001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 SeedPlants
Gb_02229 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Gb_03959 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 SeedPlants
Gb_04167 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 SeedPlants
Gb_05554 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Gb_08128 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 SeedPlants
Gb_08569 No alias RNA editing factor (OTP82) 0.02 SeedPlants
Gb_09146 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 SeedPlants
Gb_11545 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Gb_11926 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 SeedPlants
Gb_14956 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.01 SeedPlants
Gb_16032 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.02 SeedPlants
Gb_16546 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 SeedPlants
Gb_18149 No alias OTP70 plastidial RNA splicing factor 0.02 SeedPlants
Gb_18745 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 SeedPlants
Gb_21351 No alias RNA editing factor (CRR21) 0.02 SeedPlants
Gb_23967 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Gb_24126 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 SeedPlants
Gb_26571 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 SeedPlants
Gb_26695 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 SeedPlants
Gb_28037 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.02 SeedPlants
Gb_28390 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 SeedPlants
Gb_28393 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.01 SeedPlants
Gb_29995 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 SeedPlants
Gb_30523 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.01 SeedPlants
Gb_31474 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 SeedPlants
Gb_32921 No alias RNA editing factor (OTP82) 0.02 SeedPlants
Gb_33959 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Gb_36081 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.01 SeedPlants
Gb_36538 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 SeedPlants
Gb_37509 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 SeedPlants
Gb_37517 No alias RNA editing factor (OTP82) 0.01 SeedPlants
Gb_37820 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Gb_38301 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Gb_41325 No alias RNA editing factor (MEF19) 0.01 SeedPlants
LOC_Os01g41650.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 SeedPlants
LOC_Os01g42280.1 No alias RNA editing factor (CRR21) 0.02 SeedPlants
LOC_Os03g64370.1 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.02 SeedPlants
LOC_Os07g07620.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.02 SeedPlants
MA_10164206g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 SeedPlants
MA_135075g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 SeedPlants
MA_17949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 SeedPlants
MA_18165g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 SeedPlants
MA_31170g0010 No alias RNA editing factor (MEF19) 0.03 SeedPlants
MA_71104g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 SeedPlants
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 SeedPlants
MA_86628g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
MA_94165g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 99 146
IPR002885 Pentatricopeptide_repeat 302 349
IPR002885 Pentatricopeptide_repeat 172 200
IPR002885 Pentatricopeptide_repeat 202 228
IPR002885 Pentatricopeptide_repeat 377 400
No external refs found!