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  5. AMTR_s00001p00155170

AMTR_s00001p00155170 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.140

Description : Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0011968 (LandPlants) Phylogenetic Tree(s): OG_02_0011968_tree ,
OG_03_0000000 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00155170
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00036710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
AT3G61170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Gb_00862 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_27880 No alias RNA editing factor (ECB2/VAC1) 0.04 Archaeplastida
Gb_27891 No alias RNA editing factor (OTP86) 0.02 Archaeplastida
Gb_39402 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
LOC_Os01g41650.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_10164206g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_138676g0010 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
MA_17949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_18165g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_31170g0010 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
MA_322292g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_525914g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_65500g0010 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.02 Archaeplastida
MA_71104g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_8319g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_86628g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_94165g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_9526611g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_958908g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Smo125997 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Smo131170 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Smo82072 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Smo96927 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 Archaeplastida
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.02 Archaeplastida
GSVIVT01036757001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 SeedPlants
Gb_02229 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Gb_03959 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 SeedPlants
Gb_04167 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 SeedPlants
Gb_05554 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Gb_08128 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 SeedPlants
Gb_08569 No alias RNA editing factor (OTP82) 0.02 SeedPlants
Gb_09146 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 SeedPlants
Gb_11545 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Gb_11926 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 SeedPlants
Gb_14956 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.01 SeedPlants
Gb_16032 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.02 SeedPlants
Gb_16546 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 SeedPlants
Gb_18149 No alias OTP70 plastidial RNA splicing factor 0.02 SeedPlants
Gb_18745 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 SeedPlants
Gb_21351 No alias RNA editing factor (CRR21) 0.02 SeedPlants
Gb_23967 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Gb_24126 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 SeedPlants
Gb_26571 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 SeedPlants
Gb_26695 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 SeedPlants
Gb_28037 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.02 SeedPlants
Gb_28390 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 SeedPlants
Gb_28393 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.01 SeedPlants
Gb_29995 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 SeedPlants
Gb_30523 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.01 SeedPlants
Gb_31474 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 SeedPlants
Gb_32921 No alias RNA editing factor (OTP82) 0.02 SeedPlants
Gb_33959 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Gb_36081 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.01 SeedPlants
Gb_36538 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 SeedPlants
Gb_37509 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 SeedPlants
Gb_37517 No alias RNA editing factor (OTP82) 0.01 SeedPlants
Gb_37820 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Gb_38301 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Gb_41325 No alias RNA editing factor (MEF19) 0.01 SeedPlants
LOC_Os01g41650.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 SeedPlants
LOC_Os01g42280.1 No alias RNA editing factor (CRR21) 0.02 SeedPlants
LOC_Os03g64370.1 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.02 SeedPlants
LOC_Os07g07620.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.02 SeedPlants
MA_10164206g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 SeedPlants
MA_135075g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 SeedPlants
MA_17949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 SeedPlants
MA_18165g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 SeedPlants
MA_31170g0010 No alias RNA editing factor (MEF19) 0.03 SeedPlants
MA_71104g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 SeedPlants
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 SeedPlants
MA_86628g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
MA_94165g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 99 146
IPR002885 Pentatricopeptide_repeat 302 349
IPR002885 Pentatricopeptide_repeat 172 200
IPR002885 Pentatricopeptide_repeat 202 228
IPR002885 Pentatricopeptide_repeat 377 400
No external refs found!