Mp1g12380.1


Description : protein factor PRPF8/SUS2 of U5 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG_01_0004586 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004586_tree ,
OG_02_0005265 (LandPlants) Phylogenetic Tree(s): OG_02_0005265_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g12380.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00089870 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 Archaeplastida
AT1G80070 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 0.05 Archaeplastida
Cpa|evm.model.tig00000093.136 No alias Pre-mRNA-processing-splicing factor 8A OS=Arabidopsis thaliana 0.05 Archaeplastida
Cpa|evm.model.tig00000093.137 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 Archaeplastida
Cre01.g016050 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
GSVIVT01017346001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 Archaeplastida
Gb_00344 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.05 Archaeplastida
LOC_Os05g07050.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.02 Archaeplastida
LOC_Os06g07080.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.02 Archaeplastida
MA_7388g0020 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.07 Archaeplastida
Pp3c24_20910V3.1 No alias Pre-mRNA-processing-splicing factor 0.05 Archaeplastida
Pp3c8_25090V3.1 No alias Pre-mRNA-processing-splicing factor 0.04 Archaeplastida
Smo173603 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 Archaeplastida
Solyc07g008880.3.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.08 Archaeplastida
Zm00001e030094_P003 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.02 Archaeplastida
Zm00001e036397_P001 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.06 Archaeplastida
AMTR_s00046p00089870 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 LandPlants
AT1G80070 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 0.05 LandPlants
GSVIVT01017346001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 LandPlants
Gb_00344 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.05 LandPlants
LOC_Os05g07050.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.02 LandPlants
LOC_Os06g07080.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.02 LandPlants
MA_7388g0020 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.08 LandPlants
Pp3c24_20910V3.1 No alias Pre-mRNA-processing-splicing factor 0.05 LandPlants
Pp3c8_25090V3.1 No alias Pre-mRNA-processing-splicing factor 0.04 LandPlants
Smo173603 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 LandPlants
Solyc07g008880.3.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.07 LandPlants
Zm00001e030094_P003 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.02 LandPlants
Zm00001e036397_P001 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.06 LandPlants

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0017070 U6 snRNA binding IEA Interproscan
MF GO:0030623 U5 snRNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR012592 PROCN 416 821
IPR012984 PROCT 2232 2352
IPR019582 RRM_spliceosomal_PrP8 1006 1096
IPR021983 PRP8_domainIV 1780 2009
IPR000555 JAMM/MPN+_dom 2121 2219
IPR012591 PRO8NT 75 226
IPR019581 Prp8_U5-snRNA-bd 1230 1363
IPR019580 Prp8_U6-snRNA-bd 1462 1620
No external refs found!