Mp1g06970.1


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 187.0)


Gene families : OG_01_0000364 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000364_tree ,
OG_02_0000134 (LandPlants) Phylogenetic Tree(s): OG_02_0000134_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g06970.1
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Gb_10322 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_26718 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_37606 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_08095 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.01 LandPlants
Gb_10322 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Gb_26718 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Gb_37606 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 LandPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 377 489
IPR025724 GAG-pre-integrase_dom 306 363
IPR001878 Znf_CCHC 118 134
No external refs found!