Mp1g01200.1


Description : UPF1 Nonsense-Mediated mRNA Decay effector protein


Gene families : OG_01_0001972 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001972_tree ,
OG_02_0003008 (LandPlants) Phylogenetic Tree(s): OG_02_0003008_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g01200.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00142490 evm_27.TU.AmTr_v1... RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.04 Archaeplastida
AT5G47010 UPF1, ATUPF1, LBA1 RNA helicase, putative 0.08 Archaeplastida
Cre02.g092500 No alias RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.02 Archaeplastida
Cre03.g150350 No alias Regulator of nonsense transcripts 1 homolog... 0.03 Archaeplastida
GSVIVT01013247001 No alias RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.07 Archaeplastida
Gb_10553 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.05 Archaeplastida
Gb_10555 No alias Regulator of nonsense transcripts 1 homolog... 0.02 Archaeplastida
Gb_10556 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 Archaeplastida
Gb_22830 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 Archaeplastida
LOC_Os07g31340.1 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.1 Archaeplastida
MA_10326503g0010 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.02 Archaeplastida
MA_10426702g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_10426702g0020 No alias Regulator of nonsense transcripts 1 homolog... 0.02 Archaeplastida
MA_10436671g0010 No alias Regulator of nonsense transcripts 1 homolog... 0.06 Archaeplastida
Pp3c20_16510V3.1 No alias RNA helicase, putative 0.06 Archaeplastida
Pp3c23_9370V3.1 No alias RNA helicase, putative 0.06 Archaeplastida
Solyc08g007110.4.1 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 Archaeplastida
Solyc08g077420.3.1 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.1 Archaeplastida
Zm00001e010427_P002 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.07 Archaeplastida
Zm00001e035036_P001 No alias no hits & (original description: none) 0.09 Archaeplastida
AMTR_s00071p00142490 evm_27.TU.AmTr_v1... RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.03 LandPlants
AT5G47010 UPF1, ATUPF1, LBA1 RNA helicase, putative 0.07 LandPlants
GSVIVT01013247001 No alias RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.06 LandPlants
Gb_10553 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.05 LandPlants
Gb_10555 No alias Regulator of nonsense transcripts 1 homolog... 0.01 LandPlants
Gb_10556 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.03 LandPlants
Gb_22830 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 LandPlants
LOC_Os07g31340.1 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.09 LandPlants
MA_10326503g0010 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.01 LandPlants
MA_10426702g0010 No alias no hits & (original description: none) 0.03 LandPlants
MA_10436671g0010 No alias Regulator of nonsense transcripts 1 homolog... 0.05 LandPlants
Pp3c20_16510V3.1 No alias RNA helicase, putative 0.05 LandPlants
Pp3c23_9370V3.1 No alias RNA helicase, putative 0.04 LandPlants
Solyc08g007110.4.1 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.03 LandPlants
Solyc08g077420.3.1 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.08 LandPlants
Zm00001e010427_P002 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.06 LandPlants
Zm00001e035036_P001 No alias no hits & (original description: none) 0.08 LandPlants

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR040812 UPF1_1B_dom 329 418
IPR041679 DNA2/NAM7-like_C 686 882
IPR006935 Helicase/UvrB_N 476 541
IPR041677 DNA2/NAM7_AAA_11 579 677
IPR018999 UPF1_CH/ZBD 124 276
No external refs found!