LOC_Os01g43040 (Os01g0617600, Os01g0617650)


Aliases : Os01g0617600, Os01g0617650

Description : 35.2 not assigned.unknown A member of the RPD gene family - there are13 annotated genes and one EST encoding RPD1-like proteins in Arabidopsis. Shows no homology to any protein of known function. Abundant expression found in the shoot apex and the root. rpd1 mutant is a temperature-sensitive mutant isolated on the basis of the impairment in adventitious roots formation in hypocotyl region. Also, disruption of the RPD1 gene by a T-DNA insertion caused embryogenesis arrest at the globular to transition stages. This phenotype is consistent with the hypothesized function of RPD1 in the maintenance of active cell proliferation. ROOT PRIMORDIUM DEFECTIVE 1 (RPD1)


Gene families : OG_01_0009871 (Gene family) Phylogenetic Tree(s): OG0009871_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os01g43040
Cluster HCCA cluster: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
AT4G33495 RPD1 Ubiquitin carboxyl-terminal hydrolase family protein 0.04 Gene family
Solyc06g063270.3.1 Solyc06g063270.3 35.2 not assigned.unknown A member of the RPD gene... 0.04 Gene family
Zm00001d021232 GRMZM2G417963 35.2 not assigned.unknown A member of the RPD gene... 0.05 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR021099 PORR_domain 299 647
IPR013057 AA_transpt_TM 60 148
No external refs found!