Gb_41555


Description : component UPF2 of RNA quality control Exon Junction complex


Gene families : OG_01_0003758 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003758_tree ,
OG_02_0006352 (LandPlants) Phylogenetic Tree(s): OG_02_0006352_tree ,
OG_03_0006889 (SeedPlants) Phylogenetic Tree(s): OG_03_0006889_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_41555
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00123630 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.06 Archaeplastida
AT2G39260 No alias binding;RNA binding 0.03 Archaeplastida
Cpa|evm.model.tig00022080.18 No alias Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre17.g729250 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 Archaeplastida
GSVIVT01016353001 No alias RNA processing.RNA quality control Exon Junction complex... 0.07 Archaeplastida
MA_10434184g0010 No alias component UPF2 of RNA quality control Exon Junction complex 0.01 Archaeplastida
MA_10437229g0010 No alias component UPF2 of RNA quality control Exon Junction complex 0.03 Archaeplastida
Mp4g13780.1 No alias component UPF2 of RNA quality control Exon Junction complex 0.03 Archaeplastida
Pp3c11_19990V3.1 No alias binding;RNA binding 0.07 Archaeplastida
Solyc04g049770.4.1 No alias component UPF2 of RNA quality control Exon Junction complex 0.07 Archaeplastida
Zm00001e023044_P004 No alias component UPF2 of RNA quality control Exon Junction complex 0.02 Archaeplastida
AMTR_s00041p00123630 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.04 LandPlants
AT2G39260 No alias binding;RNA binding 0.03 LandPlants
GSVIVT01016353001 No alias RNA processing.RNA quality control Exon Junction complex... 0.06 LandPlants
MA_10437229g0010 No alias component UPF2 of RNA quality control Exon Junction complex 0.02 LandPlants
Mp4g13780.1 No alias component UPF2 of RNA quality control Exon Junction complex 0.02 LandPlants
Pp3c11_19990V3.1 No alias binding;RNA binding 0.05 LandPlants
Solyc04g049770.4.1 No alias component UPF2 of RNA quality control Exon Junction complex 0.03 LandPlants
Zm00001e023044_P004 No alias component UPF2 of RNA quality control Exon Junction complex 0.02 LandPlants
AMTR_s00041p00123630 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.03 SeedPlants
AT2G39260 No alias binding;RNA binding 0.02 SeedPlants
GSVIVT01016353001 No alias RNA processing.RNA quality control Exon Junction complex... 0.05 SeedPlants
MA_10437229g0010 No alias component UPF2 of RNA quality control Exon Junction complex 0.02 SeedPlants
Solyc04g049770.4.1 No alias component UPF2 of RNA quality control Exon Junction complex 0.03 SeedPlants
Zm00001e023044_P004 No alias component UPF2 of RNA quality control Exon Junction complex 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003890 MIF4G-like_typ-3 502 686
IPR003890 MIF4G-like_typ-3 703 898
IPR007193 Upf2/Nmd2_C 1024 1158
No external refs found!