LOC_Os01g31800 (Os01g0502700)


Aliases : Os01g0502700

Description : 28.1.3.2.1 DNA.synthesis/chromatin structure.histone.core.H2A Encodes HTA12, a histone H2A protein. histone H2A 12 (HTA12)


Gene families : OG_01_0000078 (Gene family) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os01g31800
Cluster HCCA cluster: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.04 Gene family
AT1G51060 HTA10 histone H2A 10 0.13 Gene family
AT3G20670 HTA13 histone H2A 13 0.15 Gene family
AT4G27230 HTA2 histone H2A 2 0.06 Gene family
AT5G27670 HTA7 histone H2A 7 0.03 Gene family
AT5G54640 RAT5, HTA1, ATHTA1 Histone superfamily protein 0.01 Gene family
AT5G59870 HTA6 histone H2A 6 0.16 Gene family
GSVIVT01011034001 No alias No description available 0.09 Gene family
GSVIVT01014580001 No alias 28.1.3.2.1 DNA.synthesis/chromatin... 0.03 Gene family
GSVIVT01025019001 No alias 28.1.3.2.1 DNA.synthesis/chromatin... 0.02 Gene family
GSVIVT01025533001 No alias 28.1.3.2.1 DNA.synthesis/chromatin... 0.04 Gene family
GSVIVT01031123001 No alias 28.1.3.2.1 DNA.synthesis/chromatin... 0.05 Gene family
LOC_Os07g36140 Os07g0545400 28.1.3.2.1 DNA.synthesis/chromatin... 0.02 Gene family
MA_10426943g0010 No alias No description available 0.05 Gene family
MA_10434390g0010 No alias 28.1.3.2.1 DNA.synthesis/chromatin... 0.02 Gene family
MA_11514g0010 No alias 28.1.3.2.1 DNA.synthesis/chromatin... 0.03 Gene family
MA_169054g0020 No alias 28.1.3.2.1 DNA.synthesis/chromatin... 0.03 Gene family
MA_213048g0010 No alias No description available 0.02 Gene family
MA_22203g0020 No alias 28.1.3.2.1 DNA.synthesis/chromatin... 0.02 Gene family
MA_427046g0010 No alias 28.1.3.2.1 DNA.synthesis/chromatin... 0.04 Gene family
MA_74667g0010 No alias No description available 0.02 Gene family
Smo166626 PACid_15417838 No description available 0.03 Gene family
Smo170948 PACid_15409856 No description available 0.02 Gene family
Smo73637 PACid_15408374 No description available 0.02 Gene family
Solyc01g099410.3.1 Solyc01g099410.3 28.1.3.2.1 DNA.synthesis/chromatin... 0.15 Gene family
Solyc09g010400.3.1 Solyc09g010400.3 28.1.3.2.1 DNA.synthesis/chromatin... 0.05 Gene family
Solyc09g074300.1.1 Solyc09g074300.1 No description available 0.04 Gene family
Solyc09g082710.3.1 Solyc09g082710.3 No description available 0.04 Gene family
Solyc10g006560.3.1 Solyc10g006560.3 28.1.3.2.1 DNA.synthesis/chromatin... 0.03 Gene family
Solyc11g073250.2.1 Solyc11g073250.2 28.1.3.2.1 DNA.synthesis/chromatin... 0.06 Gene family
Solyc12g005270.2.1 Solyc12g005270.2 28.1.3.2.1 DNA.synthesis/chromatin... 0.04 Gene family
Zm00001d006213 No alias 28.1.3.2.1 DNA.synthesis/chromatin... 0.16 Gene family
Zm00001d006547 GRMZM2G151826 28.1.3.2.1 DNA.synthesis/chromatin... 0.08 Gene family
Zm00001d006548 GRMZM2G151726 28.1.3.2.1 DNA.synthesis/chromatin... 0.04 Gene family
Zm00001d012837 GRMZM2G028955 28.1.3.2.1 DNA.synthesis/chromatin... 0.18 Gene family
Zm00001d013392 GRMZM2G046055 No description available 0.06 Gene family
Zm00001d019045 GRMZM2G003306 28.1.3.2.1 DNA.synthesis/chromatin... 0.18 Gene family
Zm00001d021300 GRMZM2G109448 28.1.3.2.1 DNA.synthesis/chromatin... 0.11 Gene family
Zm00001d021706 GRMZM2G041381 No description available 0.09 Gene family
Zm00001d023901 GRMZM5G883764 No description available 0.21 Gene family
Zm00001d033822 GRMZM2G107540 No description available 0.02 Gene family
Zm00001d038381 GRMZM2G130746 28.1.3.2.1 DNA.synthesis/chromatin... 0.02 Gene family
Zm00001d047787 GRMZM2G305046 28.1.3.2.1 DNA.synthesis/chromatin... 0.08 Gene family

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan
MF GO:0003677 DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 105 138
IPR007125 Histone_H2A/H2B/H3 20 102
No external refs found!