LOC_Os01g27520 (Os01g0372700)


Aliases : Os01g0372700

Description : 29.1.22 protein.aa activation.asparagine-tRNA ligase SYNC3


Gene families : OG_01_0001807 (Gene family) Phylogenetic Tree(s): OG0001807_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os01g27520
Cluster HCCA cluster: Cluster_289

Target Alias Description ECC score Gene Family Method Actions
AT5G56680 SYNC1 ARATH,... Class II aminoacyl-tRNA and biotin synthetases... 0.03 Gene family
Cre03.g193800 No alias 29.1.22 protein.aa activation.asparagine-tRNA ligase... 0.02 Gene family
Solyc10g080710.2.1 Solyc10g080710.2 29.1.22 protein.aa activation.asparagine-tRNA ligase... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA InterProScan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA InterProScan
MF GO:0005524 ATP binding IEA InterProScan
BP GO:0006418 tRNA aminoacylation for protein translation IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004365 NA-bd_OB_tRNA 43 119
IPR000738 WHEP-TRS_dom 232 270
IPR004364 aa-tRNA-synt_II 142 202
IPR004364 aa-tRNA-synt_II 290 552
No external refs found!