Pnu_g31928 (HRE2)

Aliases : HRE2

Description : transcription factor component *(HRE/RAP2.12) of oxygen-sensor activity & original description: none

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pnu_g31928

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00218200	evm_27.TU.AmTr_v1...	Ethylene-responsive transcription factor ERF015...	0.03	OrthoFinder output from all 47 species
AMTR_s00068p00102110	RAP2.11,...	External stimuli response.biotic...	0.03	OrthoFinder output from all 47 species
AMTR_s00077p00176570	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
AMTR_s00129p00119770	RAP2.2,...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.05	OrthoFinder output from all 47 species
AT1G03800	ATERF10, ERF10	ERF domain protein 10	0.02	OrthoFinder output from all 47 species
AT1G44830	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
AT1G53910	RAP2.12	related to AP2 12	0.03	OrthoFinder output from all 47 species
AT1G64380	No alias	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT1G72360	HRE1	Integrase-type DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT4G18450	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
AT4G39780	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
AT5G05410	DREB2A, DREB2	DRE-binding protein 2A	0.02	OrthoFinder output from all 47 species
AT5G07310	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
AT5G13330	Rap2.6L	related to AP2 6l	0.04	OrthoFinder output from all 47 species
AT5G61890	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
Aev_g00499	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g08073	RAP2.2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Als_g20815	RAP2.2	transcription factor component *(HRE/RAP2.12) of...	0.05	OrthoFinder output from all 47 species
Als_g36155	Rap2.6L	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g04116	RAP2.2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Aop_g17847	ATERF3, ERF3	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene05675.t1	Aspi01Gene05675	subgroup ERF-III transcription factor & original...	0.05	OrthoFinder output from all 47 species
Aspi01Gene21088.t1	Aspi01Gene21088	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene29677.t1	PUCHI, Aspi01Gene29677	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene49734.t1	HRE2, Aspi01Gene49734	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene55263.t1	RAP2.11, Aspi01Gene55263	transcription factor *(ERN1) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene65526.t1	TINY2, Aspi01Gene65526	subgroup ERF-III transcription factor & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0168.g054644	TINY2	subgroup ERF-III transcription factor & original...	0.04	OrthoFinder output from all 47 species
Cba_g23893	RAP2.2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Ceric.10G018900.1	ERF2, ATERF2,...	subgroup ERF-VI transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dac_g09321	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Dcu_g23766	No alias	subgroup ERF-I transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g02414	ERF72, EBP, ATEBP, RAP2.3	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Ehy_g22214	tny	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g25390	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
GSVIVT01017572001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.05	OrthoFinder output from all 47 species
Gb_03645	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.03	OrthoFinder output from all 47 species
LOC_Os01g73770.1	CBF4, DREB1D,...	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
LOC_Os02g45450.1	CBF4, DREB1D,...	Dehydration-responsive element-binding protein 1G...	0.02	OrthoFinder output from all 47 species
LOC_Os02g54050.1	LOC_Os02g54050	Ethylene-responsive transcription factor ERF018...	0.03	OrthoFinder output from all 47 species
LOC_Os07g22730.1	ERF1, ATERF1,...	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os08g36920.1	RRTF1, LOC_Os08g36920	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Len_g02180	No alias	subgroup ERF-III transcription factor & original...	0.05	OrthoFinder output from all 47 species
Len_g54846	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_120531g0010	ATERF-9, ERF9, ATERF9	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Mp4g22280.1	CRF1	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp5g11100.1	ATERF4, RAP2.5,...	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Msp_g22598	CRF3	subgroup ERF-VI transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g38462	ATERF12, ERF12	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g44895	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pp3c10_17870V3.1	Pp3c10_17870	Integrase-type DNA-binding superfamily protein	0.01	OrthoFinder output from all 47 species
Pp3c1_5010V3.1	Pp3c1_5010	Integrase-type DNA-binding superfamily protein	0.01	OrthoFinder output from all 47 species
Pp3c5_810V3.1	Pp3c5_810	Integrase-type DNA-binding superfamily protein	0.01	OrthoFinder output from all 47 species
Ppi_g10469	ATERF-9, ERF9, ATERF9	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006108	No alias	not classified & original description: CDS=1-567	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013429	ATERF12, ERF12	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sam_g06091	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g15417	No alias	subgroup ERF-IV/DREB2 transcription factor & original...	0.04	OrthoFinder output from all 47 species
Solyc03g093540.1.1	Solyc03g093540	transcription factor (ERF)	0.04	OrthoFinder output from all 47 species
Solyc03g093550.1.1	Solyc03g093550	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Solyc04g051360.3.1	ABR1, Solyc04g051360	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Solyc06g082590.1.1	CRF4, Solyc06g082590	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Spa_g16486	RAP2.11	transcription factor *(ERN1) & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g21730	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g39331	LEP	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e014008_P002	WIN1, SHN1,...	transcription factor (ERF). SHN-type cutin and suberin...	0.02	OrthoFinder output from all 47 species
Zm00001e023816_P001	Zm00001e023816	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Zm00001e026989_P001	ERF110, Zm00001e026989	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Zm00001e027350_P001	ATERF12, ERF12,...	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Zm00001e031783_P001	ERF110, Zm00001e031783	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Zm00001e035811_P001	PUCHI, Zm00001e035811	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003909	DNA ligase activity	IEP	HCCA
MF	GO:0003910	DNA ligase (ATP) activity	IEP	HCCA
MF	GO:0004150	dihydroneopterin aldolase activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016832	aldehyde-lyase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	29	77

External Links

No external refs found!

Pnu_g31928 (HRE2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation