AMTR_s00050p00171700 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00050.38

Description : 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana


Gene families : OG_01_0000179 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000179_tree ,
OG_02_0000459 (LandPlants) Phylogenetic Tree(s): OG_02_0000459_tree ,
OG_03_0000725 (SeedPlants) Phylogenetic Tree(s): OG_03_0000725_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00050p00171700
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00213640 evm_27.TU.AmTr_v1... Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.04 Archaeplastida
AT1G20510 OPCL1 OPC-8:0 CoA ligase1 0.02 Archaeplastida
GSVIVT01008694001 No alias 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os01g67530.1 No alias 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp.... 0.05 Archaeplastida
LOC_Os03g04000.1 No alias OPC-8:CoA synthetase 0.03 Archaeplastida
LOC_Os08g14760.1 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.02 Archaeplastida
Mp5g01200.1 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.03 Archaeplastida
Pp3c13_8490V3.1 No alias AMP-dependent synthetase and ligase family protein 0.02 Archaeplastida
Pp3c8_730V3.1 No alias acyl-CoA synthetase 5 0.03 Archaeplastida
Smo110329 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.04 Archaeplastida
Smo177466 No alias 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.04 Archaeplastida
Smo231716 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.03 Archaeplastida
Smo429785 No alias 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Solyc08g076300.3.1 No alias 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e037698_P001 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.03 Archaeplastida
GSVIVT01008694001 No alias 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.02 LandPlants
Gb_19726 No alias 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.02 LandPlants
LOC_Os03g04000.1 No alias OPC-8:CoA synthetase 0.02 LandPlants
Smo177466 No alias 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.03 LandPlants
Smo231716 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.03 LandPlants
Smo429785 No alias 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica 0.02 LandPlants
GSVIVT01008694001 No alias 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.02 SeedPlants
Gb_21816 No alias OPC-8:CoA synthetase 0.02 SeedPlants
LOC_Os03g04000.1 No alias OPC-8:CoA synthetase 0.02 SeedPlants
Zm00001e000264_P001 No alias OPC-8:CoA synthetase 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
BP GO:0008152 metabolic process IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig 70 482
No external refs found!