ATMG00090

Description : structural constituent of ribosome;protein binding

Gene families : OG0009011 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009011_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATMG00090

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00272590	evm_27.TU.AmTr_v1...	Ribosomal protein S3, mitochondrial OS=Petunia hybrida	0.04	OrthoFinder output from all 47 species
Aev_g20617	No alias	not classified & original description: none	0.11	OrthoFinder output from all 47 species
Ala_g25281	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Als_g05492	No alias	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Aob_g23054	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aob_g29749	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Aop_g18051	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Cba_g33316	No alias	not classified & original description: none	0.11	OrthoFinder output from all 47 species
Ceric.23G029400.1	Ceric.23G029400	not classified & original description: pacid=50610062...	0.06	OrthoFinder output from all 47 species
Dde_g51885	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Gb_13807	No alias	Ribosomal protein S3, mitochondrial OS=Zea mays...	0.08	OrthoFinder output from all 47 species
LOC_Os12g34054.1	LOC_Os12g34054	component mtRPS3 of small ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
LOC_Os12g34124.1	LOC_Os12g34124	component mtRPS3 of small ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Len_g01174	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g38544	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Mp1g05170.1	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Nbi_g22008	No alias	not classified & original description: none	0.12	OrthoFinder output from all 47 species
Pir_g61975	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g08984	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Solyc05g045826.1.1	Solyc05g045826	Ribosomal protein S3, mitochondrial OS=Petunia hybrida...	0.01	OrthoFinder output from all 47 species
Spa_g02218	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g11330	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000314	organellar small ribosomal subunit	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	TAS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
CC	GO:0005763	mitochondrial small ribosomal subunit	TAS	Interproscan
BP	GO:0006412	translation	TAS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0098798	mitochondrial protein-containing complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000315	organellar large ribosomal subunit	IEP	HCCA
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
CC	GO:0005762	mitochondrial large ribosomal subunit	IEP	HCCA
BP	GO:0008535	respiratory chain complex IV assembly	IEP	HCCA
BP	GO:0017004	cytochrome complex assembly	IEP	HCCA
CC	GO:0030964	NADH dehydrogenase complex	IEP	HCCA
CC	GO:0045271	respiratory chain complex I	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
CC	GO:1902495	transmembrane transporter complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA
CC	GO:1990351	transporter complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001351	Ribosomal_S3_C	463	539

External Links

No external refs found!

ATMG00090

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation