ATCG00190 (RPOB)

Aliases : RPOB

Description : RNA polymerase subunit beta

Gene families : OG0005891 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005891_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATCG00190
Cluster	HCCA: Cluster_74

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00102p00108130	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.13	OrthoFinder output from all 47 species
AMTR_s00145p00090170	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.12	OrthoFinder output from all 47 species
AMTR_s00626p00011520	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Morus indica	0.13	OrthoFinder output from all 47 species
AMTR_s01499p00009870	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.12	OrthoFinder output from all 47 species
Aev_g18557	RPOB	core component *(RpoB) of plastid-encoded RNA polymerase...	0.3	OrthoFinder output from all 47 species
Ceric.02G012900.1	RPOB, Ceric.02G012900	not classified & original description: pacid=50585256...	0.12	OrthoFinder output from all 47 species
Ceric.02G016400.1	RPOB, Ceric.02G016400	not classified & original description: pacid=50585906...	0.02	OrthoFinder output from all 47 species
Ceric.29G004600.1	RPOB, Ceric.29G004600	not classified & original description: pacid=50625776...	0.03	OrthoFinder output from all 47 species
Ceric.33G023100.1	RPOB, Ceric.33G023100	not classified & original description: pacid=50607182...	0.12	OrthoFinder output from all 47 species
Ceric.38G009900.1	RPOB, Ceric.38G009900	not classified & original description: pacid=50579505...	0.18	OrthoFinder output from all 47 species
Gb_02251	RPOB	RpoB core component plastid-encoded RNA polymerase	0.07	OrthoFinder output from all 47 species
Gb_06830	RPOB	DNA-directed RNA polymerase subunit beta OS=Pinus...	0.07	OrthoFinder output from all 47 species
Gb_09029	RPOB	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.06	OrthoFinder output from all 47 species
LOC_Os04g16820.1	RPOB, LOC_Os04g16820	RpoB core component plastid-encoded RNA polymerase	0.06	OrthoFinder output from all 47 species
LOC_Os05g22830.1	RPOB, LOC_Os05g22830	DNA-directed RNA polymerase subunit beta OS=Oryza sativa...	0.1	OrthoFinder output from all 47 species
LOC_Os05g22860.1	RPOB, LOC_Os05g22860	DNA-directed RNA polymerase subunit beta OS=Oryza sativa...	0.23	OrthoFinder output from all 47 species
Mp1g13170.1	RPOB	DNA-directed RNA polymerase subunit beta OS=Marchantia...	0.06	OrthoFinder output from all 47 species
Mp6g01430.1	No alias	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
Nbi_g14004	RPOB	core component *(RpoB) of plastid-encoded RNA polymerase...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027472	RPOB	not classified & original description: CDS=1-1728	0.15	OrthoFinder output from all 47 species
Smo236845	RPOB	RNA biosynthesis.organelle machineries.RNA polymerase...	0.03	OrthoFinder output from all 47 species
Smo237022	RPOB	RNA biosynthesis.organelle machineries.RNA polymerase...	0.03	OrthoFinder output from all 47 species
Smo237023	RPOB	RNA biosynthesis.organelle machineries.RNA polymerase...	0.03	OrthoFinder output from all 47 species
Solyc00g500053.1.1	RPOB, Solyc00g500053	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.17	OrthoFinder output from all 47 species
Solyc01g095950.1.1	RPOB, Solyc01g095950	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.15	OrthoFinder output from all 47 species
Solyc02g067590.2.1	RPOB, Solyc02g067590	DNA-directed RNA polymerase subunit beta OS=Liriodendron...	0.17	OrthoFinder output from all 47 species
Solyc10g017920.1.1	RPOB, Solyc10g017920	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.13	OrthoFinder output from all 47 species
Solyc12g035870.3.1	RPOB, Solyc12g035870	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	RCA	Interproscan
BP	GO:0006354	DNA-templated transcription elongation	TAS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009295	nucleoid	IDA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	RCA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000312	plastid small ribosomal subunit	IEP	HCCA
CC	GO:0000314	organellar small ribosomal subunit	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
CC	GO:0009532	plastid stroma	IEP	HCCA
CC	GO:0009570	chloroplast stroma	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007642	RNA_pol_Rpb2_2	129	315
IPR007641	RNA_pol_Rpb2_7	983	1058
IPR007644	RNA_pol_bsu_protrusion	17	362
IPR007645	RNA_pol_Rpb2_3	376	444
IPR007120	DNA-dir_RNAP_su2_dom	582	981

External Links

No external refs found!

ATCG00190 (RPOB)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation