AT5G66240

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG0002761 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002761_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G66240

Target	Alias	Description	ECC score	Gene Family Method
Ala_g05621	No alias	component *(S2Lb/SWD2) of COMPASS histone trimethylation...	0.03	OrthoFinder output from all 47 species
Als_g08121	No alias	component *(S2Lb/SWD2) of COMPASS histone trimethylation...	0.03	OrthoFinder output from all 47 species
Aob_g22882	No alias	component *(S2Lb/SWD2) of COMPASS histone trimethylation...	0.02	OrthoFinder output from all 47 species
Aop_g62246	No alias	component *(S2Lb/SWD2) of COMPASS histone trimethylation...	0.02	OrthoFinder output from all 47 species
Azfi_s0017.g014449	No alias	component *(S2Lb/SWD2) of COMPASS histone trimethylation...	0.04	OrthoFinder output from all 47 species
Dcu_g13988	No alias	component *(S2Lb/SWD2) of COMPASS histone trimethylation...	0.04	OrthoFinder output from all 47 species
Dcu_g19310	No alias	component *(S2Lb/SWD2) of COMPASS histone trimethylation...	0.03	OrthoFinder output from all 47 species
Ehy_g05616	No alias	component *(S2Lb/SWD2) of COMPASS histone trimethylation...	0.03	OrthoFinder output from all 47 species
GSVIVT01032417001	No alias	Protein ANTHESIS POMOTING FACTOR 1 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
Len_g01709	No alias	component *(S2Lb/SWD2) of COMPASS histone trimethylation...	0.04	OrthoFinder output from all 47 species
Lfl_g04548	No alias	component *(S2Lb/SWD2) of COMPASS histone trimethylation...	0.02	OrthoFinder output from all 47 species
Ppi_g07411	No alias	component *(S2Lb/SWD2) of COMPASS histone trimethylation...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011307	No alias	not classified & original description: CDS=188-952	0.02	OrthoFinder output from all 47 species
Solyc02g083940.3.1	Solyc02g083940	auxiliary component S2Lb of COMPASS histone...	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
MF	GO:0000166	nucleotide binding	ISS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0048573	photoperiodism, flowering	RCA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	ISS	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	31	58
IPR001680	WD40_repeat	109	145

External Links

No external refs found!

AT5G66240

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation