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  5. AT5G65900

AT5G65900


Description : DEA(D/H)-box RNA helicase family protein


Gene families : OG0005389 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005389_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G65900
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Aev_g03252 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Ala_g09581 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Cba_g76143 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.04 OrthoFinder output from all 47 species
Cre07.g314900 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Ehy_g09142 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
GSVIVT01008218001 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Nbi_g04320 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Ore_g04508 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
Zm00001e011842_P001 Zm00001e011842 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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class="col-xs-1">BP
Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010286 heat acclimation IEP HCCA
CC GO:0010369 chromocenter IEP HCCA
BP GO:0016572 obsolete histone phosphorylation IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 388 494
IPR025313 DUF4217 540 596
IPR011545 DEAD/DEAH_box_helicase_dom 178 349
No external refs found!