AT5G63530 (FP3, ATFP3)

Aliases : FP3, ATFP3

Description : farnesylated protein 3

Gene families : OG0000445 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000445_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G63530

Target	Alias	Description	ECC score	Gene Family Method
Als_g26754	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g38026	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene09620.t1	Aspi01Gene09620	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene09624.t1	Aspi01Gene09624	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0153.g053481	No alias	not classified & original description: CDS=1-915	0.02	OrthoFinder output from all 47 species
Ceric.11G048500.1	Ceric.11G048500	not classified & original description: pacid=50594833...	0.04	OrthoFinder output from all 47 species
Ceric.22G022800.1	Ceric.22G022800	not classified & original description: pacid=50614342...	0.03	OrthoFinder output from all 47 species
Ceric.22G022900.1	Ceric.22G022900	not classified & original description: pacid=50613882...	0.04	OrthoFinder output from all 47 species
Dcu_g50127	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01025734001	No alias	Heavy metal-associated isoprenylated plant protein 5...	0.03	OrthoFinder output from all 47 species
GSVIVT01026762001	No alias	Heavy metal-associated isoprenylated plant protein 4...	0.02	OrthoFinder output from all 47 species
GSVIVT01031502001	No alias	Heavy metal-associated isoprenylated plant protein 3...	0.03	OrthoFinder output from all 47 species
Gb_21282	No alias	Heavy metal-associated isoprenylated plant protein 7...	0.03	OrthoFinder output from all 47 species
Len_g57009	FP3, ATFP3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g10437	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g24221	FP3, ATFP3	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Nbi_g18324	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Solyc04g015030.4.1	Solyc04g015030	Heavy metal-associated isoprenylated plant protein 7...	0.05	OrthoFinder output from all 47 species
Spa_g49683	HIPP20	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006873	cellular monoatomic ion homeostasis	None	Extended
BP	GO:0006875	cellular metal ion homeostasis	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	None	Extended
BP	GO:0009616	RNAi-mediated antiviral immune response	RCA	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010050	vegetative phase change	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016441	post-transcriptional gene silencing	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019725	cellular homeostasis	None	Extended
BP	GO:0030003	cellular monoatomic cation homeostasis	None	Extended
BP	GO:0031047	RNA-mediated gene silencing	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045087	innate immune response	None	Extended
MF	GO:0046872	metal ion binding	ISS	Interproscan
MF	GO:0046914	transition metal ion binding	IDA	Interproscan
BP	GO:0046916	cellular transition metal ion homeostasis	TAS	Interproscan
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050801	monoatomic ion homeostasis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051607	defense response to virus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0055065	metal ion homeostasis	None	Extended
BP	GO:0055076	transition metal ion homeostasis	None	Extended
BP	GO:0055080	monoatomic cation homeostasis	None	Extended
BP	GO:0055082	cellular chemical homeostasis	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
BP	GO:0098771	inorganic ion homeostasis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140546	defense response to symbiont	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0003002	regionalization	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0009880	embryonic pattern specification	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0045892	negative regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006121	HMA_dom	175	231
IPR006121	HMA_dom	78	130

External Links

No external refs found!

AT5G63530 (FP3, ATFP3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation