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  5. AT5G62460

AT5G62460


Description : RING/FYVE/PHD zinc finger superfamily protein


Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G62460

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00126340 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Aev_g09334 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09880 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g40952 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g46783 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05081 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g68684 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g16042 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g17057 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06352 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g04802 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g22283 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Gb_12336 No alias RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os02g36740.1 LOC_Os02g36740 RING-v-class E3 ligase 0.04 OrthoFinder output from all 47 species
LOC_Os08g33860.1 LOC_Os08g33860 RING-v-class E3 ligase 0.04 OrthoFinder output from all 47 species
LOC_Os11g38800.1 LOC_Os11g38800 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Lfl_g08250 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
MA_10427291g0010 No alias RING-v-class E3 ligase 0.04 OrthoFinder output from all 47 species
Mp8g15410.1 No alias RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Msp_g12114 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g09753 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g07989 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g58767 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50720 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Smo420592 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Solyc01g010880.3.1 Solyc01g010880 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc03g116030.4.1 Solyc03g116030 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Spa_g30245 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g37701 No alias E3 ubiquiTin ligase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
CC GO:0000815 ESCRT III complex IEP HCCA
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
MF GO:0004713 protein tyrosine kinase activity IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005770 late endosome IEP HCCA
CC GO:0005771 multivesicular body IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
BP GO:0009692 ethylene metabolic process IEP HCCA
BP GO:0009693 ethylene biosynthetic process IEP HCCA
BP GO:0009832 plant-type cell wall biogenesis IEP HCCA
BP GO:0016233 telomere capping IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0019187 beta-1,4-mannosyltransferase activity IEP HCCA
CC GO:0030173 obsolete integral component of Golgi membrane IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0043449 cellular alkene metabolic process IEP HCCA
BP GO:0043450 alkene biosynthetic process IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0051753 mannan synthase activity IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
BP GO:0120251 hydrocarbon biosynthetic process IEP HCCA
BP GO:0120252 hydrocarbon metabolic process IEP HCCA
BP GO:0120255 olefinic compound biosynthetic process IEP HCCA
BP GO:1900673 olefin metabolic process IEP HCCA
BP GO:1900674 olefin biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022143 DUF3675 129 248
IPR011016 Znf_RING-CH 78 123
No external refs found!