AT5G62150

Description : peptidoglycan-binding LysM domain-containing protein

Gene families : OG0003208 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003208_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G62150
Cluster	HCCA: Cluster_56

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00156520	evm_27.TU.AmTr_v1...	No description available	0.04	OrthoFinder output from all 47 species
AT3G52790	No alias	peptidoglycan-binding LysM domain-containing protein	0.08	OrthoFinder output from all 47 species
Aspi01Gene11452.t1	Aspi01Gene11452	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene69403.t1	Aspi01Gene69403	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g16461	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g24473	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Gb_39268	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Len_g06968	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10325924g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_157865g0010	AAc1, ACT1	Actin-1 OS=Oryza sativa subsp. indica...	0.05	OrthoFinder output from all 47 species
MA_427792g0010	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_8389288g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Solyc03g026370.1.1	Solyc03g026370	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009627	systemic acquired resistance	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016998	cell wall macromolecule catabolic process	ISS	Interproscan
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034976	response to endoplasmic reticulum stress	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
MF	GO:0008146	sulfotransferase activity	IEP	HCCA
BP	GO:0009806	lignan metabolic process	IEP	HCCA
BP	GO:0009807	lignan biosynthetic process	IEP	HCCA
BP	GO:0010214	seed coat development	IEP	HCCA
BP	GO:0010393	galacturonan metabolic process	IEP	HCCA
CC	GO:0012505	endomembrane system	IEP	HCCA
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	HCCA
BP	GO:0044347	cell wall polysaccharide catabolic process	IEP	HCCA
BP	GO:0045488	pectin metabolic process	IEP	HCCA
MF	GO:0046910	pectinesterase inhibitor activity	IEP	HCCA
BP	GO:0048363	mucilage pectin metabolic process	IEP	HCCA
BP	GO:0048609	multicellular organismal reproductive process	IEP	HCCA
BP	GO:0080001	mucilage extrusion from seed coat	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G62150

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation