AT5G60980

Description : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain

Gene families : OG0000432 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000432_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G60980

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00039p00228400	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
Adi_g010072	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g25747	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g02233	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g06595	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g50035	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000829.14	No alias	No description available	0.05	OrthoFinder output from all 47 species
Dac_g13869	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g05948	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os04g30430.1	LOC_Os04g30430	mRNA endoribonuclease (G3BP)	0.04	OrthoFinder output from all 47 species
Lfl_g25357	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.03	OrthoFinder output from all 47 species
MA_10429469g0010	No alias	mRNA endoribonuclease (G3BP)	0.05	OrthoFinder output from all 47 species
MA_4039171g0010	No alias	mRNA endoribonuclease (G3BP)	0.06	OrthoFinder output from all 47 species
Mp4g17080.1	No alias	mRNA endoribonuclease (G3BP)	0.04	OrthoFinder output from all 47 species
Msp_g07609	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc06g083730.3.1	Solyc06g083730	mRNA endoribonuclease (G3BP)	0.1	OrthoFinder output from all 47 species
Spa_g06094	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g23025	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g53276	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e022613_P001	Zm00001e022613	mRNA endoribonuclease (G3BP)	0.06	OrthoFinder output from all 47 species
Zm00001e040697_P001	Zm00001e040697	mRNA endoribonuclease (G3BP)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0004013	adenosylhomocysteinase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005797	Golgi medial cisterna	IEP	HCCA
CC	GO:0005801	cis-Golgi network	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006498	N-terminal protein lipidation	IEP	HCCA
BP	GO:0006499	N-terminal protein myristoylation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006730	one-carbon metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009306	protein secretion	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009853	photorespiration	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010026	trichome differentiation	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
BP	GO:0010091	trichome branching	IEP	HCCA
BP	GO:0010393	galacturonan metabolic process	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016049	cell growth	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016441	post-transcriptional gene silencing	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
MF	GO:0017151	DEAD/H-box RNA helicase binding	IEP	HCCA
BP	GO:0018377	protein myristoylation	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031365	N-terminal protein amino acid modification	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
CC	GO:0031985	Golgi cisterna	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0035592	establishment of protein localization to extracellular region	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0045488	pectin metabolic process	IEP	HCCA
BP	GO:0045595	regulation of cell differentiation	IEP	HCCA
MF	GO:0046508	hydrolase activity, acting on carbon-sulfur bonds	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
BP	GO:0048589	developmental growth	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0051049	regulation of transport	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0052546	cell wall pectin metabolic process	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0071692	protein localization to extracellular region	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
BP	GO:0080129	proteasome core complex assembly	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
BP	GO:0140718	facultative heterochromatin formation	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	295	352
IPR002075	NTF2_dom	15	131

External Links

No external refs found!

AT5G60980

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation